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AT5G44430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant defensin 1.2C
Curator
Summary (TAIR10)
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational
Description (TAIR10)
plant defensin 1.2C (PDF1.2c); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1); Has 191 Blast hits to 191 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:AB017065EMBL:CP002688EnsemblPlants:AT5G44430EnsemblPlants:AT5G44430.1
entrez:834470Gene3D:3.30.30.10GeneID:834470GO:GO:0005576
GO:GO:0006952GO:GO:0031640GO:GO:0050832Gramene:AT5G44430.1
hmmpanther:PTHR33147hmmpanther:PTHR33147:SF4HOGENOM:HOG000238637InParanoid:Q9FI22
InterPro:IPR003614InterPro:IPR008176KEGG:ath:AT5G44430OMA:EANNACK
PaxDb:Q9FI22Pfam:PF00304Pfam:Q9FI22PhylomeDB:Q9FI22
PRO:PR:Q9FI22PROSITE:PS00940ProteinModelPortal:Q9FI22Proteomes:UP000006548
RefSeq:NP_199256.1scanprosite:PS00940SMART:SM00505STRING:3702.AT5G44430.1
SUPFAM:SSF57095TAIR:AT5G44430tair10-symbols:PDF1.2cTMHMM:TMhelix
UniGene:At.55354UniProt:Q9FI22
Coordinates (TAIR10) chr5:-:17909092..17909444
Molecular Weight (calculated) 8550.45 Da
IEP (calculated) 7.98
GRAVY (calculated) 0.36
Length 80 amino acids
Sequence (TAIR10)
(BLAST)
1: MAKSATIITF LFAALVLFAA FEAPTMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYVPC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)