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AT5G44380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:24012629 (2013): nucleus
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall; EXPRESSED IN: shoot apex, hypocotyl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44390.1); Has 6276 Blast hits to 6099 proteins in 947 species: Archae - 86; Bacteria - 3186; Metazoa - 42; Fungi - 1722; Plants - 710; Viruses - 0; Other Eukaryotes - 530 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44380-MONOMEReggNOG:COG0277EMBL:AB011475EMBL:AK226516
EMBL:AY093127EMBL:CP002688EnsemblPlants:AT5G44380EnsemblPlants:AT5G44380.1
entrez:834464Gene3D:3.30.465.10GeneID:834464GO:GO:0005618
GO:GO:0006979GO:GO:0009506GO:GO:0016614GO:GO:0050660
Gramene:AT5G44380.1hmmpanther:PTHR32448hmmpanther:PTHR32448:SF11HOGENOM:HOG000238933
InterPro:IPR006094InterPro:IPR012951InterPro:IPR016166InterPro:IPR016169
KEGG:ath:AT5G44380OMA:ANWLENDPfam:PF01565Pfam:PF08031
Pfscan:PS51387PhylomeDB:Q9FKV0PROSITE:PS51387Proteomes:UP000006548
RefSeq:NP_199251.1SMR:Q9FKV0STRING:3702.AT5G44380.1SUPFAM:SSF56176
SwissPalm:Q9FKV0TAIR:AT5G44380TMHMM:TMhelixUniGene:At.19702
UniGene:At.26608UniProt:Q9FKV0
Coordinates (TAIR10) chr5:-:17878873..17881369
Molecular Weight (calculated) 60619.80 Da
IEP (calculated) 10.00
GRAVY (calculated) -0.13
Length 541 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNSKPLPTI SCIIVSVLYF SFYCITPTSS SASIQDQFIN CVKRNTHVSF PLEKTLFTPA KNVSLFNQVL ESTAQNLQFL AKSMPKPGFI FRPIHQSQVQ
101: ASIICSKKLG IHFRVRSGGH DFEALSYVSR IEKPFILLDL SKLKQINVDI ESNSAWVQPG ATLGELYYRI AEKSKIHGFP AGLCTSVGIG GYMTGGGYGT
201: LMRKYGLAGD NVLDVKMVDA NGKLLDRAAM GEDLFWAIRG GGGASFGIVL AWKIKLVPVP KTVTVFTVTK TLEQDARLKT ISKWQQISSK IIEEIHIRVV
301: LRAAGNDGNK TVTMTYLGQF LGEKGTLLKV MEKAFPELGL TQKDCTEMSW IEAALFHGGF PTGSPIEILL QLKSPLGKDY FKATSDFVKE PIPVIGLKGI
401: FKRLIEGNTT FLNWTPYGGM MSKIPESAIP FPHRNGTLFK ILYYANWLEN DKTSSRKINW IKEIYNYMAP YVSSNPRQAY VNYRDLDFGQ NKNNAKVNFI
501: EAKIWGPKYF KGNFDRLVKI KTKVDPENFF RHEQSIPPMP Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)