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AT5G42680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF617
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT4G39610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:834277eggNOG:ENOG410IHUDeggNOG:ENOG410YEAVEMBL:AB007647
EMBL:BT014788EMBL:BT015690EMBL:CP002688EnsemblPlants:AT5G42680
EnsemblPlants:AT5G42680.1EnsemblPlants:AT5G42680.2entrez:834277GeneID:834277
Gramene:AT5G42680.1Gramene:AT5G42680.2hmmpanther:PTHR31696HOGENOM:HOG000238116
InterPro:IPR006460KEGG:ath:AT5G42680OMA:MPSFIDGPfam:PF04759
PhylomeDB:Q9FMZ6Proteomes:UP000006548RefSeq:NP_001190452.1RefSeq:NP_199082.1
TAIR:AT5G42680TIGRfam:TIGR01570TIGRFAMs:TIGR01570UniGene:At.30159
UniProt:Q9FMZ6
Coordinates (TAIR10) chr5:+:17114640..17115356
Molecular Weight (calculated) 26722.60 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.27
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MPIRSNPFFN MDSSALLSLL RHTGTSMDSK SSKKSSGSIG GGVLKMFKLI PMLSSGCKMV NLLSRGHRRP LLKDYATTGT IFGFRKGRVF LAIQEDPHCL
101: PIFIIELPML TSALQKEMAS ETVRIALESE TKTSRKKVLE EYVWGIYCNG RKIGYSIRRK NMSEEEMYVI DALRGVSMGA GVLPCKNQYD QETEGEMTYM
201: RARFDRVIGS KDSEALYMIN PEGSGQGTEL SIYFLRSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)