AT5G41950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: protein import into mitochondrial outer membrane; LOCATED IN: mitochondrial outer membrane translocase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16785825..16789360 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62400.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.39 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||
| Length | 565 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADTVEEPQL QNGAAPAESE TEQNPIPEPQ LQTEPKLTGE IPEIEADLTP EEVQSEVTDA KPEEVQSEVK PEEVKTVVTD AKPEEAQSEV KPEEVQSVVT 101: DTKPDLTDVD LSPGGSEEIP IRSTEVEQES TTSVLKKDDD GNKTFTMREL LSELKSEEGD GTPHSSASPF SRESASQPAE NNPAMDLINR IQVNDEEGRS 201: RQRVLAFAAR KYASAIERNP DDHDALYNWA LILQESADNV SPDSVSPSKD DLLEEACKKY DEATRLCPTL YDAYYNWAIA ISDRAKIRGR TKEAEELWEQ 301: AADNYEKAVQ LNWNSSQALN NWGLVLQELS QIVPAREKEK VVRTAISKFR AAIRLQFDFH RAIYNLGTVL YGLAEDTLRT GGSGNGKDMP PGELYSQSAI 401: YIAAAHSLKP SYSVYSSALR LVRSMLPLPH LKVGYLTAPP VGNSLAPHSD WKRTEFELNH ERLLQVLKPE PREMGRNLSG KAETMSTNVE RKTVKVNITE 501: IVSVTPCADL TLPPGAGLCI DTIHGPVFLV ADSWESLDGW LDAIRLVYTI YARGKSDVLA GIITG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)