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AT5G41550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.920
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IGA8EMBL:AB005233EMBL:CP002688
EnsemblPlants:AT5G41550EnsemblPlants:AT5G41550.1entrez:834157Gene3D:3.40.50.10140
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:834157GO:GO:0005524
GO:GO:0007165GO:GO:0043531Gramene:AT5G41550.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702InterPro:IPR000157InterPro:IPR002182
InterPro:IPR003593InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417
InterPro:IPR032675KEGG:ath:AT5G41550OMA:CHELDITPfam:PF00931
Pfam:PF01582Pfam:PF07725Pfscan:PS50104PhylomeDB:Q9FFS5
PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_198970.1SMART:SM00255
SMART:SM00382SMR:Q9FFS5STRING:3702.AT5G41550.1SUPFAM:SSF46785
SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT5G41550
UniGene:At.51253UniProt:Q9FFS5
Coordinates (TAIR10) chr5:-:16617232..16620785
Molecular Weight (calculated) 122071.00 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.18
Length 1085 amino acids
Sequence (TAIR10)
(BLAST)
0001: MALSSSSSNI RRYHVFPSFH GPDVRKGFLS HLHYHFASKG ITTFKDQEIE KGNTIGPELV NAIRESRVSI VLLSKKYASS SWCLDELVEI LKCKEDQGQI
0101: VMTIFYDVDP SSVRKQKGDF GSTFMKTCEG KSEEVKQRWT KALTHVANIK GEHSLNWANE ADMIQKIATD VSTKLSVTPS RDFEGMVGLE AHLTKLNSLL
0201: CFEGDDVKMI GIWGPAGIGK STIARALYNQ LSSSFQLKCF MGNLKGSLKS IVGVDHYEFQ KSLQKLLLAK ILNQGDMRVH NLAAIKEWLQ DQRVLIILDD
0301: VDDLEQLEVL AKELSWFGSG SRIIVATEDK KILKEHGIND IYHVDFPSME EALEILCLSA FKQSSVPDGF EELAKKVVHL CGNLPLGLSI VGSSLRGESK
0401: HEWELQLPRI EASLDGKIES ILKVGYERLS KKNQSLFLHI ACFFNYRSVD YVTVMLADSN LDVRNGLKTL ADKCFVHISI NGWIVMHHHL LQQLGRQIVL
0501: EQSDEPGKRQ FLIEAEEIRA VLTDETGTGS VIGISYNTSN IGEVSVSKGA FEGMRNLRFL RIFNYLFSGK CTLQIPEDME YLPPLRLLHW DRYPRKSLPT
0601: KFQPERLLEL HMPHSNLEKL WGGIQPLPNI KSIDLSFSIR LKEIPNLSNA TNLETLNLTH CKTLVELPSS ISNLHKLKKL KMSGCEKLRV IPTNINLASL
0701: EVVRMNYCSR LRRFPDISSN IKTLSVGNTK IENFPPSVAG SWSRLARLEI GSRSLKILTH APQSIISLNL SNSDIRRIPD CVISLPYLVE LIVENCRKLV
0801: TIPALPPWLE SLNANKCASL KRVCCSFGNP TILTFYNCLK LDEEARRGII MQQPVDEYIC LPGKEIPAEF SHKAVGNSIT IPLAPGTFLA SSRYKACFVI
0901: LPVTGYRCHS ISCIVSSKAG FAMRICDLAR LSDWSPGTEH LFIFHGRLVY QRNMILSEII FKFNCVINEF SDDPDLDNMI IECGVQIMTE EAKGSSSSDV
1001: DNFETKSSSS ELENFETESS SSELDIFETE SSSSEADYYE DEGLKFSQVE STKTSKHTSC WSWFTKHGLR KKKMNKTRAN SRGIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)