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AT5G38220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.711
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G66900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1073eggNOG:KOG1552EMBL:AB005247EMBL:BT003886
EMBL:BT004957EMBL:CP002688EnsemblPlants:AT5G38220EnsemblPlants:AT5G38220.1
EnsemblPlants:AT5G38220.3entrez:833804ESTHER:arath-AT5G38220ExpressionAtlas:Q9FF34
Gene3D:3.40.50.1820GeneID:833804GO:GO:0016787Gramene:AT5G38220.1
Gramene:AT5G38220.3hmmpanther:PTHR12277hmmpanther:PTHR12277:SF83HOGENOM:HOG000007142
IntAct:Q9FF34InterPro:IPR022742InterPro:IPR029058KEGG:ath:AT5G38220
MEROPS:S09.A25OMA:CCLPEVSPfam:PF12146Pfam:PF12695
PhylomeDB:Q9FF34Proteomes:UP000006548RefSeq:NP_001031978.1RefSeq:NP_198638.2
STRING:3702.AT5G38220.1SUPFAM:SSF53474TAIR:AT5G38220UniGene:At.28422
UniGene:At.43428UniProt:Q9FF34
Coordinates (TAIR10) chr5:+:15269012..15271140
Molecular Weight (calculated) 37405.80 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.41
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)