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AT5G38200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class I glutamine amidotransferase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1); Has 3533 Blast hits to 3529 proteins in 1172 species: Archae - 17; Bacteria - 2871; Metazoa - 1; Fungi - 3; Plants - 53; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2071eggNOG:ENOG410IIJNEMBL:CP002688EnsemblPlants:AT5G38200
EnsemblPlants:AT5G38200.1entrez:833802Gene3D:3.40.50.880GeneID:833802
GO:GO:0006541GO:GO:0016740GO:GO:0016787Gramene:AT5G38200.1
hmmpanther:PTHR11922hmmpanther:PTHR11922:SF38InParanoid:F4KA45InterPro:IPR011697
InterPro:IPR017926InterPro:IPR029062KEGG:ath:AT5G38200MEROPS:C26.A10
OMA:YDDESNHPaxDb:F4KA45Pfam:PF07722Pfscan:PS51273
PRIDE:F4KA45PROSITE:PS51273ProteinModelPortal:F4KA45Proteomes:UP000006548
RefSeq:NP_568556.3SMR:F4KA45STRING:3702.AT5G38200.1SUPFAM:SSF52317
TAIR:AT5G38200UniGene:At.26663UniProt:F4KA45
Coordinates (TAIR10) chr5:+:15256383..15258474
Molecular Weight (calculated) 49784.10 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.42
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTIDMDPKL NDLSQILPRV LVVSRRTVRK NKFVDFVGEY HLDLIVRYGC VPVIVPRVTG VHMLLESFKP IHGVLLCEGE DIDPSLYESE ISSLSPEELQ
101: EIRETHASDT AIDKEKDSIE LGLAKLCLEQ NIPYLGICRG SQILNVACGG TLYLDLEKEL TNKLPEERRT MHIDYDNYDG HRHVVRIVEN SPLHSWFKDS
201: LDGENMEILV NSYHHQGVKR LAQRFVPMAF AADGLMEGFY DPDAYNPEEG KFIMGLQFHP ERMRQHDLDE FDYPGCPAAY QEFAKAVIAY QKKLNSSLSV
301: PKTLKLDSEM ENKRKMLVRS FSLAKYMYVR GAPGKNPSKE SELEVGAEFL ESNTALSAEQ EMRLKEMGAT VRNGGSYMKK LKVDEDKQRM ARNMMKKMNI
401: EQLSELMAFY HLMGNICGEV LDRKLQGNVN ECLRDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)