AT5G38200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Class I glutamine amidotransferase-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1); Has 3533 Blast hits to 3529 proteins in 1172 species: Archae - 17; Bacteria - 2871; Metazoa - 1; Fungi - 3; Plants - 53; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15256383..15258474 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49784.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.65 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 436 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTIDMDPKL NDLSQILPRV LVVSRRTVRK NKFVDFVGEY HLDLIVRYGC VPVIVPRVTG VHMLLESFKP IHGVLLCEGE DIDPSLYESE ISSLSPEELQ 101: EIRETHASDT AIDKEKDSIE LGLAKLCLEQ NIPYLGICRG SQILNVACGG TLYLDLEKEL TNKLPEERRT MHIDYDNYDG HRHVVRIVEN SPLHSWFKDS 201: LDGENMEILV NSYHHQGVKR LAQRFVPMAF AADGLMEGFY DPDAYNPEEG KFIMGLQFHP ERMRQHDLDE FDYPGCPAAY QEFAKAVIAY QKKLNSSLSV 301: PKTLKLDSEM ENKRKMLVRS FSLAKYMYVR GAPGKNPSKE SELEVGAEFL ESNTALSAEQ EMRLKEMGAT VRNGGSYMKK LKVDEDKQRM ARNMMKKMNI 401: EQLSELMAFY HLMGNICGEV LDRKLQGNVN ECLRDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)