AT5G37590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 6183 Blast hits to 2629 proteins in 327 species: Archae - 94; Bacteria - 1884; Metazoa - 2136; Fungi - 1054; Plants - 282; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14927403..14932709 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61794.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.67 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||
| Length | 551 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLLRILSTL YKGTHRTSRS FSSSRNLICT TFANPLSGKP RISYQNDYGG HRTNLHLLDS RLWIILSGQA AILGFCGNTV LAEDESMKSK SGDNMDESGN 101: TGLEKIEDGS VVSNIHTSKW RVFTDSGRDY FFQGKLEPAE RLFGSAIQEA KEGFGEKDPH VASACNNLAE LYRVKKEFDK AEPLYLEAVS ILEEFYGPDD 201: VRVGATLHNL GQLYLVQRKL EEARACYELK GRVLGYNHPD YAETMYHLGT VLHMLGKNTD AEALILDSLK ILEEGGQGES MAYIRRLRYL SQIYIRSNRL 301: AEAEKLQRKL LHMMELSKGW NSMEAITAAE ALALTLRLSG KLGEALELFE KCLNARKKLL PEGHIQIGGN LLHIAKTFML QASQMRRTDN SEALSKLEKA 401: KNYLENSARI AKDVLHKLKN QKSKAQKDEK SSAALRNYEH AALVILLQSL ESLAALEMSK NEIHEPKEEN LHAAEDSLLQ CVTAYKEFGY GTQLQDSSEV 501: KSEYLSCLKH LSALLAKKET TLNSKASPIS LPELKEEIKR IDIDLRSQKT G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)