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AT5G26700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 8 (TAIR:AT3G05930.1); Has 2079 Blast hits to 2055 proteins in 228 species: Archae - 2; Bacteria - 206; Metazoa - 4; Fungi - 91; Plants - 1758; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8F7eggNOG:ENOG410Y41REMBL:AF058914EMBL:BT005231
EMBL:CP002688EnsemblPlants:AT5G26700EnsemblPlants:AT5G26700.1entrez:832719
ExpressionAtlas:O65252Gene3D:2.60.120.10GeneID:832719Genevisible:O65252
GO:GO:0030145GO:GO:0045735GO:GO:0048046Gramene:AT5G26700.1
hmmpanther:PTHR31238hmmpanther:PTHR31238:SF39InParanoid:O65252InterPro:IPR001929
InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710InterPro:IPR019780
KEGG:ath:AT5G26700OMA:YTCKDSTPaxDb:O65252Pfam:O65252
Pfam:PF00190PhylomeDB:O65252PIR:T01199PRIDE:O65252
PRINTS:PR00325PRO:PR:O65252PROSITE:PS00725ProteinModelPortal:O65252
Proteomes:UP000006548RefSeq:NP_850875.1scanprosite:PS00725SMART:SM00835
SMR:O65252SUPFAM:SSF51182TAIR:AT5G26700UniGene:At.49067
UniGene:At.71213UniProt:O65252UniProt:Q541W3
Coordinates (TAIR10) chr5:-:9308439..9309548
Molecular Weight (calculated) 22812.80 Da
IEP (calculated) 9.79
GRAVY (calculated) 0.19
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFATHLVV VVTMLFVAMA SAEMLQDVCV ADLSNAVKVN GYTCKDSTQI TPEDFYFKGL ANIAATNTST GSVVTGANVE KLPGLNTLGL SMSRIDYAPN
101: GLNPPHVHPR ASEIIFVLEG QLYVGFVTTA GKLIAKNLNK GDVFTFPKGL IHFQKNIANS PASVLAAFDS QLPGTQSLVA SLFGALPDDI LAKSFQLKHK
201: QVKKIKLRYA PKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)