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AT5G26160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20610.1); Has 197 Blast hits to 158 proteins in 44 species: Archae - 0; Bacteria - 14; Metazoa - 28; Fungi - 15; Plants - 117; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNJAeggNOG:ENOG4111CTEEMBL:AC005965EMBL:AF149413
EMBL:AK228491EMBL:BT008610EMBL:CP002688EnsemblPlants:AT5G26160
EnsemblPlants:AT5G26160.1entrez:832685GeneID:832685Gramene:AT5G26160.1
hmmpanther:PTHR33414hmmpanther:PTHR33414:SF1HOGENOM:HOG000090724InterPro:IPR019448
KEGG:ath:AT5G26160OMA:TESVANDPfam:PF10358PhylomeDB:Q7Y219
Proteomes:UP000006548RefSeq:NP_197988.3STRING:3702.AT5G26160.1TAIR:AT5G26160
UniGene:At.30865UniProt:Q7Y219
Coordinates (TAIR10) chr5:+:9143269..9146312
Molecular Weight (calculated) 107945.00 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.38
Length 976 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVNDREDSS ADLYNGQLLR DIKEVSKALY LTNGPQRPVL SLSPPVRSQS VSRTTEIGLV LSNKKKKSLV PWNWKKPLNA IAHFGQRRFD VCFLLHVHSI
101: EGLPLNLDGT KLVVQWKRKD EVMTTQPSKV LQGTAEFEET LTHRCSVYGS KHGPHRSAKY QVKLFLIYVS PVDAPWLVLG KHWIDLTRIL PLSLEEMEGT
201: RSTRKWNTSF KLSGLAESAV LNLSFDYSVV TSSVCDSTSK NVMLRRVGSV PSMDHRSPPL DDGKVVNEVS PSLSLNLSQS IDFLYEKLGE QNPQRSTGTE
301: VELGLETDKQ AADSDDSGKG VETFQQERSG LEESNDPNTE SSRIEIIDVH EILKDEDESV FEETYFIDQL SVAALKSEPS NLLPKHSVDG TPKSTFSSQV
401: ISESSESKSP SAMDDSTEKE NFLEVKSSYK AAKISMTSLS LDDITESVAN DFLNMLELEE CSYVYTSDGE PTSPRESLLR EFEKEAFASG NFLLDLNGEA
501: EYVSDIDEKS NDFSFSASSL DVGENKREGK SQLLIDRRKA KVLEDLETET LLRECDFDDN SFDNSLCVCS DGFGSPIELP VDKGLDLLPL GDNIGPSVWT
601: KGGGCIRSMN HLLFRESKEA SQLIMQVSVP VVLVSELGSD ILEILQIFAA SGIEGLCSEV NALIPLEDIM GKTIHEVVDV TKFKRTGQDC SDKSKGVVVQ
701: KPPGQLHLCS SNEEFGSSMC PSNVPLEDVT SLAIDEIYIL SIEGLKIQCS MSDQDPPSGI APKPMDQSDA LELIRFSLTL DEWLRLDQGM LENKDQDLAS
801: NGKGHTLRNK LTLALQVLLR DPSLNNEPIG ASMLALIQVE RSLDSPNSSL CSLAQEGRNK ESFGYDTQLW RITEIGLAGL KIEPGADHPW CTKSQQQSGS
901: RWLLANGTDK TIKCQASESK VIIVSNVQAT RKRLDTLWSI ISDRHHQEGD LSNSAASVPF TRNLDVIFSN EVTERS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)