AT5G24450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor IIIC, subunit 5 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription factor IIIC, subunit 5; CONTAINS InterPro DOMAIN/s: Transcription factor IIIC, subunit 5 (InterPro:IPR019136); BEST Arabidopsis thaliana protein match is: Transcription factor IIIC, subunit 5 (TAIR:AT3G49410.1); Has 680 Blast hits to 642 proteins in 201 species: Archae - 0; Bacteria - 19; Metazoa - 202; Fungi - 159; Plants - 80; Viruses - 10; Other Eukaryotes - 210 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8348780..8353130 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63642.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.60 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 554 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIIENGTIS GNLPSKEAFV VHYPGYPSSI SRAVETLGGI QGITTAREST SNKLELHFRP EDPSAHPAYG ERRHCNGFLL KISKEDVKKD SLPESQPVIS 101: TSDACLPEVR PALCADIVAR VSESYCFDGM VDYQHVIPIH ADIAQQKKRK WMEVKSLAGK NDLMDMADED VMMLLPQFFS PKDRPDNLVL RLPVTSSPKK 201: KDEELTQNLY EIDIGPVFAI DFSVKEIPKI LKWEDYIVPT SNQWKWQVAV SALFEERPVW TRDSIVQRLL DKGLTCTHHM LNRFLLRAAY YFSGGPFLRF 301: WIKRGYDPRK DPESRVFQRM EFRVPPELKG YCDSNATNKS KPSWDDICAF KVFPFKCQTF LQLFELDDEY IQQEIRKPPK QTTCNYKTGW FSEALLDNLR 401: LRVAVRFVSV FPEPGFEDVF KSIQEEFERS EKTRIQKDAL QPSQRNHQET TKDMKKCKNT NKEKDDDVNA DEDSEDLDDE YEEAANDDDI SISSHGYGDM 501: ENNSRTYLQG LFNRFPSSAS ALYGSANDDN DSDGEYPIYE QESNALDDDE EDDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)