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AT4G36400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:18385124 (2008): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-linked oxidases family protein
Curator
Summary (TAIR10)
Encodes a (D)-2-hydroxyglutarate dehydrogenase.
Computational
Description (TAIR10)
FAD-linked oxidases family protein; FUNCTIONS IN: electron carrier activity, (R)-2-hydroxyglutarate dehydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase, C-terminal (InterPro:IPR004113), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167); BEST Arabidopsis thaliana protein match is: FAD-linked oxidases family protein (TAIR:AT5G06580.1); Has 16802 Blast hits to 16669 proteins in 1978 species: Archae - 280; Bacteria - 10481; Metazoa - 384; Fungi - 582; Plants - 134; Viruses - 0; Other Eukaryotes - 4941 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-871-MONOMERBioCyc:ARA:MONOMERQT-4168BioGrid:15074EC:1.1.99.39
eggNOG:COG0277eggNOG:KOG1232EMBL:AL161589EMBL:AY058061
EMBL:AY090301EMBL:CP002687EMBL:Z99708EnsemblPlants:AT4G36400
EnsemblPlants:AT4G36400.1EnsemblPlants:AT4G36400.2entrez:829792Gene3D:1.10.45.10
Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:829792Genevisible:O23240
GO:GO:0005739GO:GO:0006807GO:GO:0009853GO:GO:0047545
GO:GO:0050660GO:GO:0051990Gramene:AT4G36400.1Gramene:AT4G36400.2
hmmpanther:PTHR11748hmmpanther:PTHR11748:SF90HOGENOM:HOG000230997InParanoid:O23240
InterPro:IPR004113InterPro:IPR006094InterPro:IPR016164InterPro:IPR016166
InterPro:IPR016167InterPro:IPR016169InterPro:IPR016171KEGG:ath:AT4G36400
KO:K18204OMA:NEDWMRKPaxDb:O23240Pfam:O23240
Pfam:PF01565Pfam:PF02913Pfscan:PS51387PhylomeDB:O23240
PIR:F85429PRIDE:O23240PRO:PR:O23240PROSITE:PS51387
ProteinModelPortal:O23240Proteomes:UP000006548Reactome:R-ATH-880009RefSeq:NP_568003.2
RefSeq:NP_974692.1SMR:O23240STRING:3702.AT4G36400.1SUPFAM:SSF55103
SUPFAM:SSF56176TAIR:AT4G36400UniGene:At.26659UniProt:O23240
Coordinates (TAIR10) chr4:+:17197265..17200472
Molecular Weight (calculated) 61449.10 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.11
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMQKLRRSG EFIRFGCKSL ISSRPNKDSV SRSVSGFVNH YKSKGKLFEL SDGNYKTELH HPCISRNVGM LLQQYKCFGS SAASLIQRNP LFSSLDSKDV
101: SYFKEILGEK NVVEDKERLE TANTDWMHKY KGSSKLMLLP KNTQEVSQIL EYCDSRRLAV VPQGGNTGLV GGSVPVFDEV IVNVGLMNKI LSFDEVSGVL
201: VCEAGCILEN LATFLDTKGF IMPLDLGAKG SCHIGGNVST NAGGLRLIRY GSLHGTVLGL EAVTANGNVL DMLGTLRKDN TGYDLKHLFI GSEGSLGIVT
301: KVSILTQPKL SSVNLAFIAC KDYLSCQKLL VEAKRNLGEI LSAFEFLDNN SMDLVLNHLD GVRNPVSSSE NFYILIETTG SDETNDREKL EAFLLKSLEK
401: GLVSDGVIAQ DINQASSFWR IREGITEALQ KAGAVYKYDL SLPVEEIYNI VNDLRGRLGD LANVMGYGHL GDGNLHLNIS AAEYNDKLLG LIEPYVYEWT
501: SKHRGSISAE HGLGVMKANE IFYSKSPETV ALMASIKKLL DPKGILNPYK VLPHSLFSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)