AT5G23690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotide adenylyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G48830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7987664..7990466 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59616.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAISSVGFAC RSFSPVRTLQ SHCLWKIRFN TVAAAIETMD ESDGFATDSD RQDKVSDEPR DREWKQLNSK DLGLSSSMIA KSTRKVLNGL KSKGHDVYLV 101: GGCVRDLILK RTPKDFDILT SAELREVVRT FPRCEIVGRR FPICHVHIGD DLIEVSSFST SAQNSSRNTR TECKESSGSD GDEDCIRLNN CLQRDFTING 201: LMFDPYAKVV YDYLGGMEDI RKAKVRTVIH AGTSFHQDCA RILRAIRIAA RLGFRMSKET AHFIKNLSLL VQRLDKGRIL MEMNYMLAYG SAEASLRLLW 301: KFGILEILLP IQAAYLARSG FRRRDKRTNM LLSLFANLDK LLAPDRPCHS SLWIAILAFH KALADKPRSP IVVAAFSLAV HNCGDILEAV EITKKITRPH 401: DKSFFELVEP EENLDFQTLL DEVMDLDASI EDALNQMTDA YFISKAMSAY PQAPYSDLVF IPLQLYLRAG RIFDCVKNEE TRIGFEAKQG SKIEYGSLNS 501: GYFPEIRHVF ARVVFDTVFP LNLSQEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)