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AT5G22790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : reticulata-related 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
reticulata-related 1 (RER1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT2G37860.3); Has 4329 Blast hits to 1807 proteins in 262 species: Archae - 14; Bacteria - 665; Metazoa - 1748; Fungi - 324; Plants - 608; Viruses - 168; Other Eukaryotes - 802 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE1SeggNOG:ENOG410YE28EMBL:AB025618EMBL:AF367348
EMBL:AY081723EMBL:CP002688EnsemblPlants:AT5G22790EnsemblPlants:AT5G22790.1
entrez:832342GeneID:832342Genevisible:Q9FGP9GO:GO:0005739
GO:GO:0007275GO:GO:0009536GO:GO:0009706GO:GO:0009941
GO:GO:0016021Gramene:AT5G22790.1hmmpanther:PTHR31038hmmpanther:PTHR31038:SF4
HOGENOM:HOG000152462InParanoid:Q9FGP9InterPro:IPR021825KEGG:ath:AT5G22790
OMA:FVDWAKLPaxDb:Q9FGP9Pfam:PF11891PhylomeDB:Q9FGP9
PRIDE:Q9FGP9PRO:PR:Q9FGP9ProteinModelPortal:Q9FGP9Proteomes:UP000006548
RefSeq:NP_197671.1STRING:3702.AT5G22790.1SwissPalm:Q9FGP9TAIR:AT5G22790
tair10-symbols:RER1TMHMM:TMhelixUniGene:At.28733UniProt:Q9FGP9
Coordinates (TAIR10) chr5:-:7599395..7601573
Molecular Weight (calculated) 46834.80 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.13
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)