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AT5G20980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methionine synthase 3
Curator
Summary (TAIR10)
encodes a plastidic methionine synthase, involved in methionine de novo synthesis in the chloroplast
Computational
Description (TAIR10)
methionine synthase 3 (MS3); FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: cellular amino acid biosynthetic process, methionine biosynthetic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: Cobalamin-independent synthase family protein (TAIR:AT5G17920.2); Has 4531 Blast hits to 4521 proteins in 1682 species: Archae - 195; Bacteria - 3241; Metazoa - 18; Fungi - 208; Plants - 251; Viruses - 2; Other Eukaryotes - 616 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20980-MONOMERBioCyc:ARA:GQT-661-MONOMEREC:2.1.1.14eggNOG:COG0620
eggNOG:KOG2263EMBL:AF296834EMBL:AJ608675EMBL:AK229291
EMBL:CP002688EnsemblPlants:AT5G20980EnsemblPlants:AT5G20980.1EnsemblPlants:AT5G20980.2
entrez:832223GeneID:832223Genevisible:Q0WNZ5GO:GO:0003871
GO:GO:0005576GO:GO:0005829GO:GO:0008270GO:GO:0008705
GO:GO:0009507GO:GO:0050667Gramene:AT5G20980.1Gramene:AT5G20980.2
gramene_pathway:2.1.1.13gramene_pathway:2.1.1.14gramene_pathway:PWY-2201gramene_pathway:PWY-3841
gramene_pathway:PWY-5041gramene_pathway:PWY-702gramene_plant_reactome:1119400gramene_plant_reactome:6874919
HAMAP:MF_00172hmmpanther:PTHR30519hmmpanther:PTHR30519:SF0HOGENOM:HOG000246221
InParanoid:Q0WNZ5IntAct:Q0WNZ5InterPro:IPR002629InterPro:IPR006276
InterPro:IPR013215iPTMnet:Q0WNZ5KEGG:00270+2.1.1.14KEGG:00450+2.1.1.14
KEGG:ath:AT5G20980KO:K00549ncoils:CoilOMA:AHAMEMT
PaxDb:Q0WNZ5Pfam:PF01717Pfam:PF08267Pfam:Q0WNZ5
PhylomeDB:Q0WNZ5PIRSF:PIRSF000382PRIDE:Q0WNZ5PRO:PR:Q0WNZ5
ProteinModelPortal:Q0WNZ5Proteomes:UP000006548RefSeq:NP_001078611.1RefSeq:NP_197598.2
SABIO-RK:Q0WNZ5SMR:Q0WNZ5STRING:3702.AT5G20980.1SUPFAM:SSF51726
TAIR:AT5G20980tair10-symbols:ATMS3tair10-symbols:MS3TIGRfam:TIGR01371
TIGRFAMs:TIGR01371UniGene:At.31122UniPathway:UPA00051UniProt:Q0WNZ5
Coordinates (TAIR10) chr5:-:7124397..7128353
Molecular Weight (calculated) 90599.10 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.18
Length 812 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQLALQRLQ PLASLPRRPP SLPPPSSATP SLPCATASRR PRFYVARAMS SHIVGYPRIG PKRELKFALE SFWDGKTNVD DLQNVAANLR KSIWKHMAHA
101: GIKYIPSNTF SYYDQMLDTT AMLGAVPSRY GWESGEIGFD VYFSMARGNA SAHAMEMTKW FDTNYHYIVP ELGPDVNFSY ASHKAVVEFK EAKALGIDTV
201: PVLIGPMTYL LLSKPAKGVE KSFCLLSLID KILPVYKEVL ADLKSAGARW IQFDEPILVM DLDTSQLQAF SDAYSHMESS LAGLNVLIAT YFADVPAEAY
301: KTLMSLKCVT GFGFDLVRGL ETLDLIKMNF PRGKLLFAGV VDGRNIWAND LSASLKTLQT LEDIVGKEKV VVSTSCSLLH TAVDLVNEMK LDKELKSWLA
401: FAAQKVVEVN ALAKSFSGAK DEALFSSNSM RQASRRSSPR VTNAAVQQDV DAVKKSDHHR STEVSVRLQA QQKKLNLPAL PTTTIGSFPQ TTDLRRIRRE
501: FKAKKISEVD YVQTIKEEYE KVIKLQEELG IDVLVHGEAE RNDMVEFFGE QLSGFAFTSN GWVQSYGSRC VKPPIIYGDI TRPKAMTVFW SSMAQKMTQR
601: PMKGMLTGPV TILNWSFVRN DQPRHETCFQ IALAIKDEVE DLEKAGVTVI QIDEAALREG LPLRKSEQKF YLDWAVHAFR ITNSGVQDST QIHTHMCYSN
701: FNDIIHSIID MDADVITIEN SRSDEKLLSV FHEGVKYGAG IGPGVYDIHS PRIPSTEEIA ERINKMLAVL DSKVLWVNPD CGLKTRNYSE VKSALSNMVA
801: AAKLIRSQLN KS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)