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AT5G20830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sucrose synthase 1
Curator
Summary (TAIR10)
Encodes a protein with sucrose synthase activity (SUS1).
Computational
Description (TAIR10)
sucrose synthase 1 (SUS1); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 4 (TAIR:AT3G43190.1); Has 8160 Blast hits to 8157 proteins in 1636 species: Archae - 294; Bacteria - 5212; Metazoa - 101; Fungi - 72; Plants - 800; Viruses - 0; Other Eukaryotes - 1681 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20830-MONOMERBioCyc:ARA:GQT-1272-MONOMERBioCyc:MetaCyc:AT5G20830-MONOMERBioGrid:17481
BRENDA:2.4.1.13CAZy:GT4EC:2.4.1.13eggNOG:COG0438
eggNOG:KOG0853EMBL:AF296832EMBL:AK222090EMBL:AK316826
EMBL:CP002688EMBL:X70990EnsemblPlants:AT5G20830EnsemblPlants:AT5G20830.1
EnsemblPlants:AT5G20830.2entrez:832206EvolutionaryTrace:P49040GeneID:832206
Genevisible:P49040GO:GO:0001666GO:GO:0005829GO:GO:0005985
GO:GO:0006970GO:GO:0009409GO:GO:0009413GO:GO:0009414
GO:GO:0009506GO:GO:0009744GO:GO:0009749GO:GO:0010555
GO:GO:0016157GO:GO:0046686GO:GO:0072708Gramene:AT5G20830.1
Gramene:AT5G20830.2gramene_pathway:2.4.1.13gramene_pathway:PWY-3821gramene_pathway:PWY-621
gramene_pathway:PWYQT-4438gramene_pathway:SUCSYN-PWYhmmpanther:PTHR12526hmmpanther:PTHR12526:SF391
HOGENOM:HOG000240125InParanoid:P49040InterPro:IPR000368InterPro:IPR001296
InterPro:IPR012820KEGG:00500+2.4.1.13KEGG:ath:AT5G20830KO:K00695
ncoils:CoilOMA:MANAERMPaxDb:P49040PDB:3S27
PDB:3S28PDB:3S29PDBsum:3S27PDBsum:3S28
PDBsum:3S29Pfam:P49040Pfam:PF00534Pfam:PF00862
PhylomeDB:P49040PRIDE:P49040PRO:PR:P49040ProteinModelPortal:P49040
Proteomes:UP000006548RefSeq:NP_001031915.1RefSeq:NP_197583.1SMR:P49040
STRING:3702.AT5G20830.1SUPFAM:SSF53756SwissPalm:P49040TAIR:AT5G20830
tair10-symbols:ASUS1tair10-symbols:atsus1tair10-symbols:SUS1TIGRfam:TIGR02470
TIGRFAMs:TIGR02470UniGene:At.21918UniProt:P49040
Coordinates (TAIR10) chr5:-:7050599..7054032
Molecular Weight (calculated) 93002.80 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.33
Length 808 amino acids
Sequence (TAIR10)
(BLAST)
001: MANAERMITR VHSQRERLNE TLVSERNEVL ALLSRVEAKG KGILQQNQII AEFEALPEQT RKKLEGGPFF DLLKSTQEAI VLPPWVALAV RPRPGVWEYL
101: RVNLHALVVE ELQPAEFLHF KEELVDGVKN GNFTLELDFE PFNASIPRPT LHKYIGNGVD FLNRHLSAKL FHDKESLLPL LKFLRLHSHQ GKNLMLSEKI
201: QNLNTLQHTL RKAEEYLAEL KSETLYEEFE AKFEEIGLER GWGDNAERVL DMIRLLLDLL EAPDPCTLET FLGRVPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALEIEML QRIKQQGLNI KPRILILTRL LPDAVGTTCG ERLERVYDSE YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TYTEDAAVEL
401: SKELNGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDDKYH FSCQFTADIF AMNHTDFIIT STFQEIAGSK ETVGQYESHT
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFPYTEEK RRLTKFHSEI EELLYSDVEN KEHLCVLKDK KKPILFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELANLVVVG GDRRKESKDN EEKAEMKKMY DLIEEYKLNG QFRWISSQMD RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCKGGPA
701: EIIVHGKSGF HIDPYHGDQA ADTLADFFTK CKEDPSHWDE ISKGGLQRIE EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LEARRYLEMF YALKYRPLAQ
801: AVPLAQDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)