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AT5G17920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25641898 (2015): plasma membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24130194 (2013): peroxisome
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:21311031 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18998720 (2009): extracellular region
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:17951448 (2007): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cobalamin-independent synthase family protein
Curator
Summary (TAIR10)
Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.
Computational
Description (TAIR10)
ATMS1; FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, copper ion binding, methionine synthase activity; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress, methionine biosynthetic process; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: methionine synthase 2 (TAIR:AT3G03780.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G17920-MONOMERBioCyc:ARA:GQT-1534-MONOMERBioGrid:16936BRENDA:2.1.1.14
EC:2.1.1.14eggNOG:COG0620eggNOG:KOG2263EMBL:AB011480
EMBL:AF370522EMBL:AJ608673EMBL:AY048201EMBL:AY056098
EMBL:AY057478EMBL:AY057499EMBL:AY069876EMBL:AY070771
EMBL:AY091692EMBL:BT000691EMBL:CP002688EMBL:U97200
EnsemblPlants:AT5G17920EnsemblPlants:AT5G17920.1EnsemblPlants:AT5G17920.2entrez:831660
EvolutionaryTrace:O50008GeneID:831660Genevisible:O50008GO:GO:0003871
GO:GO:0005507GO:GO:0005774GO:GO:0005777GO:GO:0005829
GO:GO:0005886GO:GO:0008270GO:GO:0008705GO:GO:0009506
GO:GO:0009507GO:GO:0009570GO:GO:0009651GO:GO:0010043
GO:GO:0016020GO:GO:0046686GO:GO:0048046GO:GO:0050667
Gramene:AT5G17920.1Gramene:AT5G17920.2gramene_pathway:2.1.1.14gramene_pathway:PWY-5041
gramene_pathway:PWY-702gramene_plant_reactome:1119400gramene_plant_reactome:6874919HAMAP:MF_00172
hmmpanther:PTHR30519hmmpanther:PTHR30519:SF0HOGENOM:HOG000246221InParanoid:O50008
IntAct:O50008InterPro:IPR002629InterPro:IPR006276InterPro:IPR013215
iPTMnet:O50008KEGG:00270+2.1.1.14KEGG:00450+2.1.1.14KEGG:ath:AT5G17920
KO:K00549OMA:RITNCEIPaxDb:O50008PDB:1U1H
PDB:1U1JPDB:1U1UPDB:1U22PDBsum:1U1H
PDBsum:1U1JPDBsum:1U1UPDBsum:1U22Pfam:O50008
Pfam:PF01717Pfam:PF08267PhylomeDB:O50008PIRSF:PIRSF000382
PRIDE:O50008PRO:PR:O50008ProteinModelPortal:O50008Proteomes:UP000006548
RefSeq:NP_001078599.1RefSeq:NP_197294.1SABIO-RK:O50008SMR:O50008
STRING:3702.AT5G17920.1SUPFAM:SSF51726SWISS-2DPAGE:O50008TAIR:AT5G17920
tair10-symbols:ATCIMStair10-symbols:ATMETStair10-symbols:ATMS1TIGRfam:TIGR01371
TIGRFAMs:TIGR01371UniGene:At.22340UniGene:At.24550UniGene:At.71028
UniPathway:UPA00051UniProt:O50008
Coordinates (TAIR10) chr5:+:5935771..5939195
Molecular Weight (calculated) 84361.20 Da
IEP (calculated) 6.47
GRAVY (calculated) -0.14
Length 765 amino acids
Sequence (TAIR10)
(BLAST)
001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)