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AT5G11540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-arabinono-1,4-lactone oxidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-arabinono-1,4-lactone oxidase family protein; FUNCTIONS IN: D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: D-arabinono-1,4-lactone oxidase family protein (TAIR:AT2G46740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BRENDA:1.1.3.37BRENDA:1.1.3.8EC:1.1.3.8eggNOG:COG0277
eggNOG:KOG4730EMBL:AL163815EMBL:CP002688EnsemblPlants:AT5G11540
EnsemblPlants:AT5G11540.1entrez:831026Gene3D:3.30.43.10Gene3D:3.30.465.10
GeneID:831026Genevisible:Q9LYD8GO:GO:0003885GO:GO:0005773
GO:GO:0016020GO:GO:0019853GO:GO:0050105GO:GO:0050660
Gramene:AT5G11540.1hmmpanther:PTHR13878hmmpanther:PTHR13878:SF51HOGENOM:HOG000238179
InterPro:IPR006094InterPro:IPR007173InterPro:IPR010030InterPro:IPR016166
InterPro:IPR016167InterPro:IPR016169KEGG:00053+1.1.3.8KEGG:ath:AT5G11540
OMA:SGSCLYSPaxDb:Q9LYD8Pfam:PF01565Pfam:PF04030
Pfam:Q9LYD8Pfscan:PS51387PhylomeDB:Q9LYD8PIR:T48513
PRIDE:Q9LYD8PRO:PR:Q9LYD8PROSITE:PS51387ProteinModelPortal:Q9LYD8
Proteomes:UP000006548RefSeq:NP_196715.1SMR:Q9LYD8STRING:3702.AT5G11540.1
SUPFAM:SSF56176TAIR:AT5G11540TIGRfam:TIGR01677TIGRFAMs:TIGR01677
UniGene:At.54820UniPathway:UPA00132UniProt:Q9LYD8
Coordinates (TAIR10) chr5:-:3703002..3704981
Molecular Weight (calculated) 64964.60 Da
IEP (calculated) 8.39
GRAVY (calculated) -0.24
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MRYSHTLQQF SILSFFVTIW TVQSVPPQPP IRCDQTGCTV SNAYGTWPDR KTCHAANVTY PTTEEDLRKA VAYAAEHNLK VKTVTKFSHT IPKLACPSGS
101: DALLISTSKY NSVIEIEPEL LTVTADSGVS LRELIEKVEG AGFSIGTSPY WEGVSIGGLI STGSHGSSWS GRGGSVHDHV VGISLVVPAN QSEGFAKVVR
201: LEEGRDDTLL NAVKVSLGVL GVISKVKLSI EKAFKRSVTY NFTSDVALED IFMEHGKKYE FGDITWYPSR KTAVYRYDIR APVNVSGNGV NDFLGFQSNP
301: ILISKGVRAL EKGFESSKNE NGKCTTADTT LAYKKLIGNG LKNSGLIFTG YPVIGRQGKI QTSGSCLYSS SIRIDVACAW DPRYNGLFFY ETTAIFPVSR
401: FRDFLLDVKK LRDMKPERLC GIDIYNGIFI RFIKGSKAYL GQTEDSVVID FNYYRADDEL TPRLNQDVME EMEQMAFVKH GAKPHWGKNR KVGFFGVKQK
501: IGPNFDKFLE VKNKLDPKKM FSSEWSDEIL LGTEASKYDG CALEGNCVCS EERHCNPSKG YFCKEGLVYT QARVCRFSPA QVIVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)