AT5G11540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : D-arabinono-1,4-lactone oxidase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
D-arabinono-1,4-lactone oxidase family protein; FUNCTIONS IN: D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: D-arabinono-1,4-lactone oxidase family protein (TAIR:AT2G46740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:3703002..3704981 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 64964.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 585 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRYSHTLQQF SILSFFVTIW TVQSVPPQPP IRCDQTGCTV SNAYGTWPDR KTCHAANVTY PTTEEDLRKA VAYAAEHNLK VKTVTKFSHT IPKLACPSGS 101: DALLISTSKY NSVIEIEPEL LTVTADSGVS LRELIEKVEG AGFSIGTSPY WEGVSIGGLI STGSHGSSWS GRGGSVHDHV VGISLVVPAN QSEGFAKVVR 201: LEEGRDDTLL NAVKVSLGVL GVISKVKLSI EKAFKRSVTY NFTSDVALED IFMEHGKKYE FGDITWYPSR KTAVYRYDIR APVNVSGNGV NDFLGFQSNP 301: ILISKGVRAL EKGFESSKNE NGKCTTADTT LAYKKLIGNG LKNSGLIFTG YPVIGRQGKI QTSGSCLYSS SIRIDVACAW DPRYNGLFFY ETTAIFPVSR 401: FRDFLLDVKK LRDMKPERLC GIDIYNGIFI RFIKGSKAYL GQTEDSVVID FNYYRADDEL TPRLNQDVME EMEQMAFVKH GAKPHWGKNR KVGFFGVKQK 501: IGPNFDKFLE VKNKLDPKKM FSSEWSDEIL LGTEASKYDG CALEGNCVCS EERHCNPSKG YFCKEGLVYT QARVCRFSPA QVIVM |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)