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AT5G08000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 19223515
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 19223515
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glucan endo-1,3-beta-glucosidase-like protein 3
Curator
Summary (TAIR10)
Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.
Computational
Description (TAIR10)
glucan endo-1,3-beta-glucosidase-like protein 3 (E13L3); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: plasmodesmata callose-binding protein 1 (TAIR:AT5G61130.1); Has 1582 Blast hits to 1532 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 147; Plants - 1404; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
CAZy:CBM43eggNOG:ENOG410JER3eggNOG:ENOG410YQYZEMBL:AK118578
EMBL:AL133421EMBL:AY087253EMBL:BT003716EMBL:CP002688
EnsemblPlants:AT5G08000EnsemblPlants:AT5G08000.1entrez:830694GeneID:830694
Genevisible:Q9SD84GO:GO:0001872GO:GO:0009408GO:GO:0009506
GO:GO:0030247GO:GO:0031225GO:GO:0046658Gramene:AT5G08000.1
hmmpanther:PTHR32227hmmpanther:PTHR32227:SF75HOGENOM:HOG000238097InParanoid:Q9SD84
IntAct:Q9SD84InterPro:IPR012946KEGG:ath:AT5G08000OMA:THPKGSC
PaxDb:Q9SD84Pfam:PF07983Pfam:Q9SD84PhylomeDB:Q9SD84
PIR:T45625PRIDE:Q9SD84PRO:PR:Q9SD84ProteinModelPortal:Q9SD84
Proteomes:UP000006548RefSeq:NP_196417.1SMART:SM00768SMR:Q9SD84
STRING:3702.AT5G08000.1TAIR:AT5G08000tair10-symbols:E13L3tair10-symbols:PDCB2
TCDB:1.I.2.1.1UniGene:At.633UniProt:Q9SD84
Coordinates (TAIR10) chr5:+:2563684..2565282
Molecular Weight (calculated) 19901.20 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.12
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPLVLYLLT LLMAGHTSAS WCVCKTGLSD SVLQKTLDYA CGNGADCNPT HPKGSCFNPD NVRAHCNYAV NSFFQKKGQA SESCNFTGTA TLTTTDPSYT
101: GCAFPSSASG SSGSGSTTVT PGKNSPKGSN SITTFPGGNS PYSGTPSTGL LGGNITDATG TGLNPDYSTE SSGFALYYSN NLLLTGFCSL VMML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)