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AT5G07120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
endoplasmic reticulum 0.000
ASURE: cytosol,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19825596 (2008): Golgi trans-Golgi network
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sorting nexin 2B
Curator
Summary (TAIR10)
Encodes sorting nexin SNX2b. SNX2b is peripherally associated with membranes. Involved in vesicular trafficking from endosomes to the vacuole.
Computational
Description (TAIR10)
sorting nexin 2B (SNX2b); FUNCTIONS IN: phospholipid binding; INVOLVED IN: vesicle-mediated transport, intracellular signaling pathway; LOCATED IN: membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2A (TAIR:AT5G58440.1); Has 2399 Blast hits to 2386 proteins in 279 species: Archae - 13; Bacteria - 100; Metazoa - 1366; Fungi - 555; Plants - 146; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5391eggNOG:KOG2273EMBL:AK220586EMBL:AK230282
EMBL:AK316886EMBL:AL163652EMBL:CP002688EnsemblPlants:AT5G07120
EnsemblPlants:AT5G07120.1entrez:830603Gene3D:3.30.1520.10GeneID:830603
GO:GO:0005543GO:GO:0005794GO:GO:0005829GO:GO:0006897
GO:GO:0015031GO:GO:0016020GO:GO:0016050GO:GO:0016192
GO:GO:0019898GO:GO:0030904GO:GO:0032502GO:GO:0032585
GO:GO:0035091GO:GO:0045324GO:GO:0046982GO:GO:0051604
GO:GO:0090351Gramene:AT5G07120.1hmmpanther:PTHR10555hmmpanther:PTHR10555:SF155
HOGENOM:HOG000241367InParanoid:B9DFS6IntAct:B9DFS6InterPro:IPR001683
InterPro:IPR015404iPTMnet:B9DFS6KEGG:ath:AT5G07120ncoils:Coil
OMA:HPRMRNDPaxDb:B9DFS6Pfam:B9DFS6Pfam:PF00787
Pfam:PF09325Pfscan:PS50195PhylomeDB:B9DFS6PIR:T48483
PRIDE:B9DFS6PRO:PR:B9DFS6PROSITE:PS50195ProteinModelPortal:B9DFS6
Proteomes:UP000006548RefSeq:NP_196329.2SMART:SM00312SMR:B9DFS6
STRING:3702.AT5G07120.1SUPFAM:SSF64268TAIR:AT5G07120tair10-symbols:SNX2b
UniGene:At.28633UniGene:At.69715UniGene:At.74272UniProt:B9DFS6
Coordinates (TAIR10) chr5:-:2207065..2209355
Molecular Weight (calculated) 64285.40 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.67
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)