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AT5G06610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.657
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF620)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT1G27690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:830549eggNOG:ENOG410IFBDeggNOG:ENOG410YARWEMBL:AF370524
EMBL:AP002543EMBL:AY081470EMBL:CP002688EnsemblPlants:AT5G06610
EnsemblPlants:AT5G06610.1entrez:830549GeneID:830549Gramene:AT5G06610.1
hmmpanther:PTHR31300hmmpanther:PTHR31300:SF3InterPro:IPR006873KEGG:ath:AT5G06610
OMA:SVTRMEEPfam:PF04788PhylomeDB:Q9FG09Proteomes:UP000006548
RefSeq:NP_196279.1TAIR:AT5G06610UniGene:At.9068UniProt:Q9FG09
Coordinates (TAIR10) chr5:+:2029953..2033620
Molecular Weight (calculated) 40938.30 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.24
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRLAPLMEE PIDEEDQEEE RGGRKGSTRS KSWKKWIKTQ LQFIVFPKKP DMKLLLSVMG CPLFPVPPLS KISLQQVSSS AQYIIQQFAA ATGCKKLAGE
101: IKNTFVTGKI TMTMVSDINS STAVSSASSV SHKGCFVMWQ MLPEKWLIEL VGGGHKVSAG SDGEITWRYT PWLGDHAAKG AIRPLRRALQ GLDPLTISSV
201: FSSAQFVGEK EINGKDCFIL KLSTDQIDLS KRSDSTAEMI KHVAFGYFSQ KSGLLICLED SSLTRIQIPG TVPTYWETSM SSWMEDYRAI EGSEVVIAHS
301: GKTDVLISRF GETLKGGISV TRMEEKWTID DVAFDVPGLS VDCFIPPKEM KMDFHHQDAQ KHLPNYNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)