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AT5G05230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G40640.1); Has 107 Blast hits to 107 proteins in 24 species: Archae - 0; Bacteria - 4; Metazoa - 14; Fungi - 6; Plants - 79; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410IG2EeggNOG:ENOG4111PK2EMBL:AB010692
EMBL:AK228492EMBL:BT014987EMBL:BT015849EMBL:CP002688
EnsemblPlants:AT5G05230EnsemblPlants:AT5G05230.1entrez:830405Gene3D:3.30.40.10
GeneID:830405Genevisible:Q6DBN5GO:GO:0004842GO:GO:0016874
Gramene:AT5G05230.1hmmpanther:PTHR33644hmmpanther:PTHR33644:SF3HOGENOM:HOG000115796
InParanoid:Q6DBN5InterPro:IPR003613InterPro:IPR013083KEGG:ath:AT5G05230
OMA:QAFCREEPaxDb:Q6DBN5Pfam:PF04564Pfam:Q6DBN5
Pfscan:PS51698PhylomeDB:Q6DBN5PRIDE:Q6DBN5PRO:PR:Q6DBN5
PROSITE:PS51698ProteinModelPortal:Q6DBN5Proteomes:UP000006548RefSeq:NP_196142.3
SMR:Q6DBN5STRING:3702.AT5G05230.1SUPFAM:SSF57850TAIR:AT5G05230
UniGene:At.33017UniPathway:UPA00143UniProt:Q6DBN5
Coordinates (TAIR10) chr5:+:1551593..1553543
Molecular Weight (calculated) 39373.40 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.60
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)