AT5G04780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 38256 Blast hits to 13510 proteins in 241 species: Archae - 0; Bacteria - 13; Metazoa - 59; Fungi - 56; Plants - 37619; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1384540..1386447 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71729.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 635 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSPSLPRMN ILGFTVNFLI RCKVLPRRSN TSSLSRNISV LASYDQEEVS PGRYSNEFSN RNLVHEILQL CARNGAVMEA KACHGKIIRI DLEGDVTLLN 101: VLINAYSKCG FVELARQVFD GMLERSLVSW NTMIGLYTRN RMESEALDIF LEMRNEGFKF SEFTISSVLS ACGVNCDALE CKKLHCLSVK TCIDLNLYVG 201: TALLDLYAKC GMIKDAVQVF ESMQDKSSVT WSSMVAGYVQ NKNYEEALLL YRRAQRMSLE QNQFTLSSVI CACSNLAALI EGKQMHAVIC KSGFGSNVFV 301: ASSAVDMYAK CGSLRESYII FSEVQEKNLE LWNTIISGFA KHARPKEVMI LFEKMQQDGM HPNEVTFSSL LSVCGHTGLV EEGRRFFKLM RTTYGLSPNV 401: VHYSCMVDIL GRAGLLSEAY ELIKSIPFDP TASIWGSLLA SCRVYKNLEL AEVAAEKLFE LEPENAGNHV LLSNIYAANK QWEEIAKSRK LLRDCDVKKV 501: RGKSWIDIKD KVHTFSVGES GHPRIREICS TLDNLVIKFR KFGYKPSVEH ELHDVEIGKK EELLMQHSEK LALVFGLMCL PESSPVRIMK NLRICVDCHE 601: FMKAASMATR RFIIVRDVNR FHHFSDGHCS CGDFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)