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AT5G03330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.834
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G04250.2); Has 956 Blast hits to 946 proteins in 179 species: Archae - 0; Bacteria - 4; Metazoa - 388; Fungi - 96; Plants - 262; Viruses - 17; Other Eukaryotes - 189 (source: NCBI BLink).
Protein Annotations
DNASU:831875eggNOG:ENOG410INQAeggNOG:ENOG410YTN3EMBL:AL162751
EMBL:BT030018EMBL:CP002688EMBL:JQ013456EnsemblPlants:AT5G03330
EnsemblPlants:AT5G03330.1EnsemblPlants:AT5G03330.2entrez:831875GeneID:831875
Gramene:AT5G03330.1Gramene:AT5G03330.2hmmpanther:PTHR12419hmmpanther:PTHR12419:SF19
HOGENOM:HOG000264791InterPro:IPR003323KEGG:ath:AT5G03330MEROPS:C85.A04
OMA:HEENTSIPfam:PF02338Pfscan:PS50802PhylomeDB:Q9LZF7
PIR:T48354PROSITE:PS50802Proteomes:UP000006548RefSeq:NP_195953.1
RefSeq:NP_974725.1SMR:Q9LZF7SUPFAM:SSF54001TAIR:AT5G03330
UniGene:At.33292UniProt:Q9LZF7
Coordinates (TAIR10) chr5:+:807728..809608
Molecular Weight (calculated) 41691.40 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.98
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSHEENTSI VEWFLGPHPY TYPPYGIEMI HEDDEVAVAH HHHHHQSGEY YREYEDHRSS DVDNDEIIAR TLQDDFLQLE IAESNDYSHQ NQQQQHQQEG
101: YTNNYSNNNN GYAWNDQSPA VDYSSEWIGN DNDQDGRSDD SVNVFSCSSP SDTDEYVYSW ESDQCDADGE FGRRLNQMVP IPYIPKINGE IPPEEEAVSD
201: HERLRNRLEM FDFTEVKVPG DGNCQFRALA DQLYKTADRH KHVRRQIVKQ LKSRPDSYQG YVPMDFSDYL RKMSRSGEWG DHVTLQAAAD AYRVKIVVLT
301: SFKDTCYIEI LPTSQESKGV IFLSFWAEVH YNAIYLNRDT SETELQRKRK WWRFGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)