AT5G02230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.711 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:449132..450507 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31346.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.70 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFENRYGLA TSQKYDCLLF DLDDTLYPLS SGIARECGNN IKDYMTEKLG IPKDKIVELS DLLYKNYGTT MAGLRAIGYE FDYDEYHSFV HGRLPYDNIK 101: PDLVLRSLLL SLPLRKVIFT NADRVHAAKA LKKLGLEDCF EGIICFETLN LMHTNAASNN SEIFDIVGHF NRSEPVGSLP KTPVVCKPSE SAIEKALEIA 201: NIDPNRTLFF EDSVRNVQAG KRVGLYTVLV GKSTKVKGAD YALENIHNMK EAIPELWESD RKSSDVGYSG KVAVETSVRA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)