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AT5G01050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Laccase/Diphenol oxidase family protein
Curator
Summary (TAIR10)
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational
Description (TAIR10)
Laccase/Diphenol oxidase family protein; FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: root, flower; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 8 (TAIR:AT5G01040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G01050-MONOMEREC:1.10.3.2eggNOG:COG2132eggNOG:KOG1263
EMBL:AL137189EMBL:CP002688EnsemblPlants:AT5G01050EnsemblPlants:AT5G01050.1
entrez:831812Gene3D:2.60.40.420GeneID:831812Genevisible:Q9LFD1
GO:GO:0005507GO:GO:0046274GO:GO:0048046GO:GO:0052716
Gramene:AT5G01050.1hmmpanther:PTHR11709hmmpanther:PTHR11709:SF9HOGENOM:HOG000241916
InParanoid:Q9LFD1InterPro:IPR001117InterPro:IPR008972InterPro:IPR011706
InterPro:IPR011707InterPro:IPR017761KEGG:ath:AT5G01050KO:K05909
OMA:MAFIVQNPaxDb:Q9LFD1Pfam:PF00394Pfam:PF07731
Pfam:PF07732Pfam:Q9LFD1PhylomeDB:Q9LFD1PIR:T45945
PRIDE:Q9LFD1PRO:PR:Q9LFD1ProteinModelPortal:Q9LFD1Proteomes:UP000006548
RefSeq:NP_195725.1SMR:Q9LFD1STRING:3702.AT5G01050.1SUPFAM:SSF49503
TAIR:AT5G01050TIGRfam:TIGR03389TIGRFAMs:TIGR03389TMHMM:TMhelix
UniGene:At.33978UniProt:Q9LFD1
Coordinates (TAIR10) chr5:-:18209..20812
Molecular Weight (calculated) 65592.30 Da
IEP (calculated) 7.56
GRAVY (calculated) -0.08
Length 586 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRVHHSLSN QAFLVLLLFS SIASAAIVEH VLHVKDVVVT PLCKEQMIPI VNGSLPGPTI NVREGDTLVV HVINKSTYNV TIHWHGVFQL KSVWMDGANM
101: ITQCPIQPSN NFTYQFDITG QEGTLLWHAH VVNLRATIHG ALIIRPRSGR PYPFPKPYKE VPLIFQQWWD TDVRLLELRP APVSDAYLIN GLAGDSYPCS
201: KNRMFNLKVV QGKTYLLRII NAALNTHLFF KIANHNVTVV AVDAVYTTPY LTDVMILTPG QTIDAILTAD QPIGTYYMAI IPYFSAIGVP ASPDTKPTRG
301: LIVYEGATSS SSPTKPWMPP ANDIPTAHRF SSNITSLVGG PHWTPVPRHV DEKMFITMGL GLDPCPSNAK CVGPLDQRLA GSLNNRTFMI PERISMQEAY
401: FYNITGVYTD DFPDQPPLKF DFTKFEQHPT NSDMEMMFPE RKTSVKTIRF NSTVEIVLQN TGILTPESHP MHLHGFNFYV LGYGFGNYDP IRDARKLNLF
501: NPQMHNTVGV PPGGWVVLRF IANNPGIWLF HCHMDAHLPL GIMMAFIVQN GPTRETSLPS PPSNLPQCTR DPTIYDSRTT NVDMSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)