AT1G62320.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ERD (early-responsive to dehydration stress) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G11960.1); Has 1443 Blast hits to 1265 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 185; Fungi - 708; Plants - 430; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:23041668..23044855 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88241.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.36 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||
| Length | 769 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLADIGLA AAINILSALI FLLLFAILRI QPFNDRVYFP KWYLKGVRSS PVNSGAFVSK IMNLDFRSYV RFLNWMPDAL KMPEPELIDH AGLDSAVYLR 101: IYLIGLKIFG PIALLSWSIL VPVNWTSDGL QLAKLRNVTS SNIDKLSISN VERGSDRFWA HLVMAYAFTF WTCYVLMKEY EKIAAMRLSF LQSEKRRADQ 201: FTVLVRNVPP DSDESISENV QHFFLVNHPD HYLTHQVVYN ANELAKLVED KKKMQNWLDY YQLKYTRNKE QRPRMGFLGL WGKKVDAMDH YTAEIEKLSE 301: QIMEERKRIK KDDKSVMQAA FVSFKTRWGA AVCAQTQQTK NPTEWLTEWA PEAREMYWPN LAMPYVSLTV RRFVMHIAFF FLTFFFIIPI AFVQSLASIE 401: GIEKSAPFLS PIVKNKLMKS LIQGFLPGIV LKLFLIFLPT ILMIMSKFEG FISISSLERR AAFRYYIFNL VNVFLGSVIT GSAFEQLDSF LKQSANDIPR 501: TVGVAIPIKA TFFITYIMVD GWAGVAGEIF RLKPLVIFHL KNFFFVKTEK DREEAMDPGQ IDFYATEPRI QLYFLLGLVY APVTPVLLPF IIFFFGFAYL 601: VFRHQKYESA GAFWPDVHGR IISALIISQI LLLGLMSTKG KVQSTPFLLV LAILTFGFHR FCKGRYESAF VINPLQEAMI KDTLERAREP NLNLKGFLQN 701: AYVHPVFKDE EDSDEEGLIE DSDDEDCVVV QTKRQRSRRT TVASSNASRG SSQSTPFNQL DLGKGKPET |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)