AT4G38910.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : basic pentacysteine 5 | ||||||||||||
| Curator Summary (TAIR10) |
The current TAIR8 structure of this gene is incorrect. The corrected structure, which will be visible in TAIR9, indicates that this gene could possibly be a pseudogene. | ||||||||||||
| Computational Description (TAIR10) |
basic pentacysteine 5 (BPC5); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 4 (TAIR:AT2G21240.2); Has 238 Blast hits to 238 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr4:-:18145478..18146254 | ||||||||||||
| Molecular Weight (calculated) | 28924.50 Da | ||||||||||||
| IEP (calculated) | 10.05 | ||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||
| Length | 258 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPKKEQHNAL VMNKKIISIL AERDAAVKER NEAVAATKEA LASRDEALEQ RDKALSERDN AIMETESALN ALRYRENNLN YILSCAKRGG SQRFITEESH 101: LPNPSPISTI PPEAANTRPT KRKKESKQGK KMGEDLNRPV ASPGKKSRKD WDSNDVLVTF DEMTMPVPMC TCTGTARQCY KWGNGGWQSS CCTTTLSEYP 201: LPQMPNKRHS RVGGRKMSGS VFSRLLSRLA GEGHELSSPV DLKNYWARHG TNRYITIK |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)