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AT4G37110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-finger domain of monoamine-oxidase A repressor R1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-finger domain of monoamine-oxidase A repressor R1; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 (TAIR:AT2G23530.1); Has 452 Blast hits to 447 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 54; Plants - 229; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYXYeggNOG:ENOG410XQV7EMBL:AK228974EMBL:CP002687
EnsemblPlants:AT4G37110EnsemblPlants:AT4G37110.1entrez:829865GeneID:829865
GO:GO:0008270Gramene:AT4G37110.1hmmpanther:PTHR31169hmmpanther:PTHR31169:SF7
HOGENOM:HOG000265482InterPro:IPR001841InterPro:IPR018866KEGG:ath:AT4G37110
ncoils:CoilOMA:TERTWELPfam:PF10497Pfscan:PS50089
PhylomeDB:Q0WPT6PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_195428.3
STRING:3702.AT4G37110.1TAIR:AT4G37110UniGene:At.31275UniProt:Q0WPT6
Coordinates (TAIR10) chr4:-:17484343..17486197
Molecular Weight (calculated) 46932.20 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.90
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVVRTRAKC SIPVTNPNPT VGGGNSNVSI YEKCREDRIK ENLQRMKNLG IMDLSLKLKS EIRPAKRRYG NSNANPGRET SPIQLSVSSR RSSRLKQEPP
101: VSRRSSRLKN ATPVSYAEEP ELKKGKVSKE EIVLWVGEGV RPEIYTEEHE KLLGNTERTW ELFVDGCDKN GKRIYDPVRG KCCHQCRQKT LGYHTQCSQC
201: NHSVRGQFCG DCLYMRYGEH VLEALENPDW ICPVCRDICN CSFCRTKKGW LPTGAAYRKI HKLGYKSVAH YLIQTNQQSE TSEDDETDAP ADSQASEGDH
301: LLLITDGIQD NQIDENLDDD DGSNKNPDSA RKSLCFLSSG NNQTSVTDGD LKPLDVKEVD PATPVIIDLE AQCSETERMA NSANKENRET RSKRKMSAEP
401: NPNSIGGRLR QRRKIQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)