AT4G34070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-binding EF-hand family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT5G06260.1); Has 171 Blast hits to 168 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16323341..16325253 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34877.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||
| Length | 313 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLVVSSSCL PPFIFCSLSG RSIKNNRRTE TTKPAGELRG EKNPAKKGNS NSSSVDHCFT SASRAFTQKK LADLKSLFFS LASKSQSNDQ YVSYPVFQEY 101: FGLSGSLGER IFDMVTQHRK DDKMTFEDLV IAKATYEKGT DDEIAEFIYQ TLDVNGNGVL RRSDLESFLV VILKSVFSTE SSDAESSDYK EMVDALLDAA 201: TFSKSDDGSE KGMSFEDFRS WCPLVPTIRK FLGSLLIPPG PVRPGYQVPD LLYEDSVSSD RLLLKKEYAW HIGGALPHHE LVEWKLLYRS SLHGQSFNTF 301: LGHTSGMEGS NMA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)