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AT5G42850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF953, thioredoxin-like (InterPro:IPR010357); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19546eggNOG:ENOG4111Q2VeggNOG:KOG3425EMBL:AB008264
EMBL:AK118124EMBL:AY086278EMBL:BT005444EMBL:CP002688
EnsemblPlants:AT5G42850EnsemblPlants:AT5G42850.1EnsemblPlants:AT5G42850.2entrez:834296
Gene3D:3.40.30.10GeneID:834296Genevisible:Q9FMN4GO:GO:0005623
GO:GO:0045454GO:GO:0055114Gramene:AT5G42850.1Gramene:AT5G42850.2
hmmpanther:PTHR12452HOGENOM:HOG000241811InParanoid:Q9FMN4InterPro:IPR010357
InterPro:IPR012336iPTMnet:Q9FMN4KEGG:ath:AT5G42850OMA:HPWRVDS
PANTHER:PTHR12452PaxDb:Q9FMN4Pfam:PF06110Pfam:Q9FMN4
PhylomeDB:Q9FMN4PRIDE:Q9FMN4PRO:PR:Q9FMN4ProteinModelPortal:Q9FMN4
Proteomes:UP000006548RefSeq:NP_568614.1RefSeq:NP_974872.1SMR:Q9FMN4
STRING:3702.AT5G42850.1SUPFAM:SSF52833TAIR:AT5G42850UniGene:At.20056
UniGene:At.74804UniProt:Q9FMN4
Coordinates (TAIR10) chr5:-:17182072..17182568
Molecular Weight (calculated) 15207.10 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.49
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLKKVDANP STLESSLQEL KSDETSRSKI NFILFLADND PTTGQSWCPD CVRAEPVIYK TLEEFPEEVK LIRAYAGDRP TWRTPAHPWR VDSRFKLTGV
101: PTLVRWDGDS VKGRLEDHQA HLPHLILPLL APST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)