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AT3G28710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATPase, V0/A0 complex, subunit C/D
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPase, V0/A0 complex, subunit C/D; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: cultured cell, callus; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: ATPase, V0/A0 complex, subunit C/D (TAIR:AT3G28715.1); Has 631 Blast hits to 630 proteins in 306 species: Archae - 16; Bacteria - 2; Metazoa - 293; Fungi - 153; Plants - 74; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Protein Annotations
BioGrid:7831eggNOG:COG1527eggNOG:KOG2957EMBL:AP000420
EMBL:AY039864EMBL:AY077656EMBL:AY142622EMBL:CP002686
EnsemblPlants:AT3G28710EnsemblPlants:AT3G28710.1entrez:822502GeneID:822502
Genevisible:Q9LJI5GO:GO:0000325GO:GO:0005773GO:GO:0005774
GO:GO:0005794GO:GO:0005886GO:GO:0009506GO:GO:0015078
GO:GO:0015991GO:GO:0033179Gramene:AT3G28710.1hmmpanther:PTHR11028
HOGENOM:HOG000199065InParanoid:Q9LJI5InterPro:IPR002843InterPro:IPR016727
KEGG:ath:AT3G28710KO:K02146OMA:FMDFITYPANTHER:PTHR11028
PaxDb:Q9LJI5Pfam:PF01992Pfam:Q9LJI5PhylomeDB:Q9LJI5
PIRSF:PIRSF018497PRIDE:Q9LJI5PRO:PR:Q9LJI5ProteinModelPortal:Q9LJI5
Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_189512.1
SMR:Q9LJI5STRING:3702.AT3G28710.1SUPFAM:0044678SUPFAM:SSF103486
SwissPalm:Q9LJI5TAIR:AT3G28710UniGene:At.24667UniProt:Q9LJI5
Coordinates (TAIR10) chr3:-:10773144..10775594
Molecular Weight (calculated) 40794.10 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.20
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGSYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYKFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)