AT4G32200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding HORMA family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
meiotic asynaptic mutant 2, homologue of ASY1 | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15548840..15554962 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 158534.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||
| Length | 1399 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVVVSKNNEQ QSLILTTELL RTAIFNISYI RGLFPVRYFK DMSVPALDLK MKKLMPMDAE SRRLIGWMEK GVYDALHKKH LKKLIFYICE TVDGPLIEEY 0101: IFSFSYSDSD SQDVRMNINI TGINTYGGTL NSTADNSTAD MTLNQMSSVD EDFGQNARRS NAFVTYQRFS VYISFHIANY RLCYFFASVQ RTILMKLLYY 0201: EYVPPDYQPP FFRGCSEEEE AQYVWPKIPL RMEIGNVNSQ HHVLTVKVKS VLDPYDPCED ENDNMQDDER SKGPDSLHDD QPCKVFTKPS KLILTENKDA 0301: DHGEVNEEKL LLITPICEIL QDVKQDQVEH QLAKVKDTKG RPASIVQNPI LQSHEYDIRR LKARLQRLER HISVPDSPQE GIRKWFAAVS SQLFYKVMEA 0401: CTRRKPILGD AILSSTVKVQ NFNAKICSKL LKKPASIYRK KHFTLNSASL RISGLAGSIF AWAVGFCLFS AQIGHVFVQP KTRSSESKPK VTMEELEEKL 0501: TPPSSEPKSA PPSSEPKSAP PSSEPLEKLA VIRRILPEIF AQRCGQRNSS FEAFAQRRTT YDYYNIRLNP REIIFRRLQE ESKVALALSS ANYFVLSILY 0601: RFFRQWSEVS LVRRNSRLTG NPSNEAQSSR SNRIEIPTLL DEPDREGSGG HLAAPEDPVD FLAQFDPLID LEDAYNTQPQ YTEAEVNARL LHEDHVEFDL 0701: VPVVSWNTEI TAKKTLSTTE SVAEVFALCG SGDRPLTCMI PGENERPWNP PRGYVCMYEA YFRQCHLWFP IPSLIISFLN RRHMAFSQLT PAAICNFVAA 0801: LTFGAEEGYL VNVRCFEEMT TLKAIRSPGY WVVNNRPKHN FLPGPKVSNF KNWEEYYFYV RVDLESYERP FSGRKRMWTE FPDRYRPSPD FPVEFEGVLE 0901: AIFRARRRTW KDVTRSRVNR IMGKVRKSFI SFAAGLLNMP PPPAPIEEER QPLDGEAAAS NPPVSAGPSG VDQVSHEMVN PESQDRMCLE GADVVPAQEI 1001: AECDRSQSVQ VVEPEVQNIT DDRSVVVYAA PPAGEEVNTG LTILDQDKDE TVAEPGISRR SREEKGKGGA NQSKKRSASE AGLDEAAAPK TFRLSRGETL 1101: NSDQFTFKYS GEKFLVRDQE AASHLWRNLM LPGTKDFPNP DDLVLKEGYQ KFARSSLETA ALANDLIATY DRKLKLKLAD REAFDNLKKC ADQAKAIYAK 1201: DMKEMASLRD AAEIHKAEMS SLNDEVKRLN SREADLQKEF SDLQVALVAV KEHGERECNR LRNDRAAKVA RTTKKAQARL DRVKAYLKEQ EDLVGPKVDA 1301: ENQARGAEEI VGILMQRGAK IAASELSGLK ELTKRATDEV NALNVIELGD DDLNMSPDQL GFSRQISQVA PVADQHGSNV DLLAEVIRRV SVEETNQTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)