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AT4G29260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 17151019
AmiGO : vacuole 15539469
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HAD superfamily, subfamily IIIB acid phosphatase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29270.1); Has 713 Blast hits to 710 proteins in 181 species: Archae - 0; Bacteria - 300; Metazoa - 2; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G29260-MONOMERDNASU:829047eggNOG:ENOG410IVUWeggNOG:ENOG410YCRN
EMBL:AL161574EMBL:AY050945EMBL:AY091175EMBL:CP002687
EnsemblPlants:AT4G29260EnsemblPlants:AT4G29260.1entrez:829047Gene3D:3.40.50.1000
GeneID:829047GO:GO:0003993GO:GO:0005773GO:GO:0005774
GO:GO:0005829Gramene:AT4G29260.1hmmpanther:PTHR31284hmmpanther:PTHR31284:SF14
HOGENOM:HOG000237598InterPro:IPR005519InterPro:IPR010028InterPro:IPR014403
InterPro:IPR023214KEGG:ath:AT4G29260OMA:MEGPRYAPfam:PF03767
PhylomeDB:Q9M0F5PIR:T13437PIRSF:PIRSF002674Proteomes:UP000006548
RefSeq:NP_194655.1SMR:Q9M0F5STRING:3702.AT4G29260.1SUPFAM:SSF56784
TAIR:AT4G29260TIGRfam:TIGR01675TIGRFAMs:TIGR01675TMHMM:TMhelix
UniGene:At.4537UniGene:At.48918UniProt:Q9M0F5
Coordinates (TAIR10) chr4:-:14422310..14423409
Molecular Weight (calculated) 28907.80 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.28
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLRSLSIW FFFFFVFVFL INPSISIRTS FIKLPGSDGS RYCDSWRLAA ETNNVGTWDL IPSICVDSVA EYLNGDQFLS DYSVIVDYAL AFAKSVEISG
101: DGKDVWIFDI DETLLTNIDY YKAHGYGSEP YDDNKFSEWV EQGTAPAFDA SLRLYNALKK LGFTIILLTG RDEHQRTSTE TNLRDAGYSG WERLLLRGPN
201: DQGKSATNYK SEQRSKLIEE GFKIRGNSGD QWSDLQGFAV ADRSFKVPNP MYYIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)