AT4G28520.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cruciferin 3 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | ||||||||||||
| Computational Description (TAIR10) |
cruciferin 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 6292 Blast hits to 2835 proteins in 438 species: Archae - 6; Bacteria - 845; Metazoa - 715; Fungi - 295; Plants - 2066; Viruses - 10; Other Eukaryotes - 2355 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14087596..14089229 | ||||||||||||
| Molecular Weight (calculated) | 43881.50 Da | ||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||
| Length | 396 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKLSNLLVA TFGVLLVLNG CLARQSLGVP PQLQNECNLD NLDVLQATET IKSEAGQIEY WDHNHPQLRC VGVSVARYVI EQGGLYLPTF FTSPKISYVV 101: QGTGISGRVV PGCAETFMDS QPMQGQQQGQ PWQGRQGQQG QPWEGQGQQG QQGRQGQPWE GQGQQGQQGR QGQQGQPWEG QGQQGQQGFR DMHQKVEHVR 201: RGDVFANTPG SAHWIYNSGE QPLVIIALLD IANYQNQLDR NPRVFHLAGN NQQGGFGGSQ QQQEQKNLWS GFDAQVIAQA LKIDVQLAQQ LQNQQDSRGN 301: IVRVKGPFQV VRPPLRQPYE SEEWRHPRSP QGNGLEETIC SMRSHENIDD PARADVYKPS LGRVTSVNSY TLPILEYVRL SATRGVLQGV KCDGAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)