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AT4G27460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.534
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cystathionine beta-synthase (CBS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT5G53750.1); Has 145 Blast hits to 145 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:14142eggNOG:ENOG410IKMPeggNOG:ENOG4111QFCEMBL:AL078467
EMBL:AL161571EMBL:BT002893EMBL:BT020485EMBL:BT026427
EMBL:CP002687EnsemblPlants:AT4G27460EnsemblPlants:AT4G27460.1entrez:828855
GeneID:828855Genevisible:Q84WQ5Gramene:AT4G27460.1hmmpanther:PTHR13780
hmmpanther:PTHR13780:SF39HOGENOM:HOG000239294InParanoid:Q84WQ5IntAct:Q84WQ5
InterPro:IPR000644KEGG:ath:AT4G27460OMA:ECECLGKPaxDb:Q84WQ5
Pfam:PF00571Pfam:Q84WQ5Pfscan:PS51371PhylomeDB:Q84WQ5
PIR:T08938PRIDE:Q84WQ5PRO:PR:Q84WQ5PROSITE:PS51371
ProteinModelPortal:Q84WQ5Proteomes:UP000006548RefSeq:NP_194476.2SMR:Q84WQ5
STRING:3702.AT4G27460.1SUPFAM:SSF54631TAIR:AT4G27460UniGene:At.32101
UniProt:Q84WQ5
Coordinates (TAIR10) chr4:+:13732939..13734263
Molecular Weight (calculated) 41963.10 Da
IEP (calculated) 5.04
GRAVY (calculated) 0.16
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)