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AT1G75490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18450.1); Has 5736 Blast hits to 5602 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5714; Viruses - 6; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:29104eggNOG:ENOG410IYQTeggNOG:ENOG410YTDQEMBL:AC006434
EMBL:AK175902EMBL:CP002684EnsemblPlants:AT1G75490EnsemblPlants:AT1G75490.1
entrez:843885Gene3D:3.30.730.10GeneID:843885Genevisible:Q9LQZ2
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0010200Gramene:AT1G75490.1hmmpanther:PTHR31241hmmpanther:PTHR31241:SF6
HOGENOM:HOG000033697InParanoid:Q9LQZ2InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G75490MINT:MINT-8068374OMA:ISWEHINPaxDb:Q9LQZ2
Pfam:PF00847Pfam:Q9LQZ2Pfscan:PS51032PhylomeDB:Q9LQZ2
PRIDE:Q9LQZ2PRINTS:PR00367PRO:PR:Q9LQZ2PROSITE:PS51032
ProteinModelPortal:Q9LQZ2Proteomes:UP000006548RefSeq:NP_177681.2SMART:SM00380
SMR:Q9LQZ2SUPFAM:SSF54171TAIR:AT1G75490UniGene:At.34770
UniGene:At.74106UniProt:Q9LQZ2
Coordinates (TAIR10) chr1:+:28336045..28336665
Molecular Weight (calculated) 22581.10 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.71
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)