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AT4G26160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : atypical CYS HIS rich thioredoxin 1
Curator
Summary (TAIR10)
Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.
Computational
Description (TAIR10)
atypical CYS HIS rich thioredoxin 1 (ACHT1); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 2 (TAIR:AT4G29670.1); Has 10552 Blast hits to 10444 proteins in 2239 species: Archae - 117; Bacteria - 5303; Metazoa - 1388; Fungi - 716; Plants - 1267; Viruses - 3; Other Eukaryotes - 1758 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0526eggNOG:KOG0907EMBL:AF144388EMBL:AL049483
EMBL:AL161564EMBL:AY085376EMBL:BT024608EMBL:CP002687
EnsemblPlants:AT4G26160EnsemblPlants:AT4G26160.1entrez:828722Gene3D:3.40.30.10
GeneID:828722Genevisible:Q8LEK4GO:GO:0000103GO:GO:0006457
GO:GO:0006662GO:GO:0009507GO:GO:0009570GO:GO:0010109
GO:GO:0015035GO:GO:0016671GO:GO:0034599GO:GO:0045454
GO:GO:0051776Gramene:AT4G26160.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF227
HOGENOM:HOG000241250InParanoid:Q8LEK4InterPro:IPR005746InterPro:IPR012336
InterPro:IPR013766InterPro:IPR017937KEGG:ath:AT4G26160OMA:PNMIDIT
PANTHER:PTHR10438PaxDb:Q8LEK4Pfam:PF00085Pfam:Q8LEK4
Pfscan:PS51352PhylomeDB:Q8LEK4PIR:T04271PRIDE:Q8LEK4
PRO:PR:Q8LEK4PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q8LEK4
Proteomes:UP000006548RefSeq:NP_194346.1scanprosite:PS00194SMR:Q8LEK4
STRING:3702.AT4G26160.1SUPFAM:SSF52833TAIR:AT4G26160tair10-symbols:ACHT1
UniGene:At.21166UniProt:Q8LEK4
Coordinates (TAIR10) chr4:+:13255296..13256632
Molecular Weight (calculated) 24353.70 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.25
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPTTTSLRS LSFSLYASSN STPISTPIEA RQLLSSCNRF YGLSSSSSSS SLTTSSLIGN LVFSSRNQSL SVKVQALAAE TEQPKWWERK AGPNMIDITS
101: AEQFLNALKD AGDRLVIVDF YGTWCGSCRA MFPKLCKTAK EHPNILFLKV NFDENKSLCK SLNVKVLPYF HFYRGADGQV ESFSCSLAKF QKLREAIERH
201: NVGSISNISS SASEKVEDSS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)