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AT4G25850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : OSBP(oxysterol binding protein)-related protein 4B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OSBP(oxysterol binding protein)-related protein 4B (ORP4B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4A (TAIR:AT4G25860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRW6eggNOG:KOG2210EMBL:AK118071EMBL:AL049480
EMBL:AL161564EMBL:AY084235EMBL:CP002687EnsemblPlants:AT4G25850
EnsemblPlants:AT4G25850.1entrez:828691ExpressionAtlas:Q9SW00GeneID:828691
Genevisible:Q9SW00GO:GO:0006869GO:GO:0008289hmmpanther:PTHR10972
HOGENOM:HOG000242906InParanoid:Q9SW00InterPro:IPR000648PANTHER:PTHR10972
PaxDb:Q9SW00Pfam:PF01237Pfam:Q9SW00PhylomeDB:Q9SW00
PIR:T04239PRIDE:Q9SW00PRO:PR:Q9SW00ProteinModelPortal:Q9SW00
Proteomes:UP000006548RefSeq:NP_567732.1SMR:Q9SW00STRING:3702.AT4G25850.2
SUPFAM:0051579TAIR:AT4G25850tair10-symbols:ORP4BUniGene:At.43664
UniProt:Q9SW00
Coordinates (TAIR10) chr4:+:13143859..13146654
Molecular Weight (calculated) 43676.40 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.45
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEEMRKHL VLAKPFSLED EKDSEHTASN VIRKILSLFK TVRPGSDLTN FQLPPQLNLP RSQLQCYGEM VYSFVGQDLL GECSRRDLPI ERLKSVVTWN
101: ISTLRPVVFG MSPYNSVLGE THHVSNGHIN VIAEQVVHHP PVSALHATHE QENIDVTWCQ YFTPKFRGTH VDVEVKGKRV MKLLNHIETY EMDQPRLIMR
201: FLPAPGAYWA GKVKIKCPET DLEAELHLIS DSFIERFRGN NNRSIKGKIF ESSSGNQLYN IFGHWDRTVM AKNIKTGELE VIYNAKENIT GLKPPTVKNL
301: EEVTESESTM VWSEVSEGIL KKDWERAREA KIVVEEKQRA SLKQREASGE SWVPKHFLVV KDGKDWDCSP LQPTVPPAPL VIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)