suba logo
AT4G23660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polyprenyltransferase 1
Curator
Summary (TAIR10)
Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).
Computational
Description (TAIR10)
polyprenyltransferase 1 (PPT1); FUNCTIONS IN: 4-hydroxybenzoate nonaprenyltransferase activity; INVOLVED IN: ubiquinone biosynthetic process, embryo development; LOCATED IN: integral to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxybenzoate polyprenyl transferase (InterPro:IPR006370), UbiA prenyltransferase (InterPro:IPR000537); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G23660-MONOMERBioCyc:ARA:GQT-537-MONOMERBioCyc:ARA:GQT-538-MONOMERBioCyc:MetaCyc:MONOMER-17042
BRENDA:2.5.1.39EC:2.5.1.39EMBL:AB052553EMBL:AL035394
EMBL:AL161559EMBL:AY059864EMBL:BT008496EMBL:CP002687
EnsemblPlants:AT4G23660EnsemblPlants:AT4G23660.1EnsemblPlants:AT4G23660.2entrez:828466
ExpressionAtlas:Q93YP7GeneID:828466Genevisible:Q93YP7GO:GO:0002083
GO:GO:0005743GO:GO:0006744GO:GO:0008299GO:GO:0016021
GO:GO:0047293gramene_pathway:2.5.1.39gramene_pathway:PWY-5871gramene_plant_reactome:1119353
gramene_plant_reactome:6874942HAMAP:MF_01635hmmpanther:PTHR11048hmmpanther:PTHR11048:SF28
HOGENOM:HOG000003697InterPro:IPR000537InterPro:IPR006370InterPro:IPR030470
InterPro:IPR031103Pfam:PF01040Pfam:Q93YP7PhylomeDB:Q93YP7
PIR:T05598PRIDE:Q93YP7PRO:PR:Q93YP7PROSITE:PS00943
ProteinModelPortal:Q93YP7Proteomes:UP000006548Reactome:R-ATH-2142789RefSeq:NP_567688.1
RefSeq:NP_849431.1scanprosite:PS00943SMR:Q93YP7TAIR:AT4G23660
tair10-symbols:AtPPT1tair10-symbols:PPT1TIGRfam:TIGR01474TIGRFAMs:TIGR01474
TMHMM:TMhelixUniGene:At.2563UniPathway:UPA00232UniProt:Q93YP7
Coordinates (TAIR10) chr4:-:12328086..12331359
Molecular Weight (calculated) 44605.90 Da
IEP (calculated) 9.48
GRAVY (calculated) 0.14
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFFGLSRVS RRLLKSSVSV TPSSSSALLQ SQHKSLSNPV TTHYTNPFTK CYPSWNDNYQ VWSKGRELHQ EKFFGVGWNY RLICGMSSSS SVLEGKPKKD
101: DKEKSDGVVV KEASWIDLYL PEEVRGYAKL ARLDKPIGTW LLAWPCMWSI ALAADPGSLP SFKYMALFGC GALLLRGAGC TINDLLDQDI DTKVDRTKLR
201: PIASGLLTPF QGIGFLGLQL LLGLGILLQL NNYSRVLGAS SLLLVFSYPL MKRFTFWPQA FLGLTINWGA LLGWTAVKGS IAPSIVLPLY LSGVCWTLVY
301: DTIYAHQDKE DDVKVGVKST ALRFGDNTKL WLTGFGTASI GFLALSGFSA DLGWQYYASL AAASGQLGWQ IGTADLSSGA DCSRKFVSNK WFGAIIFSGV
401: VLGRSFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)