suba logo
AT4G23530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF793)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT4G11300.1); Has 140 Blast hits to 137 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUF3eggNOG:ENOG41106XTEMBL:AL031326EMBL:AL161559
EMBL:AY063829EMBL:AY117209EMBL:CP002687EnsemblPlants:AT4G23530
EnsemblPlants:AT4G23530.1entrez:828453GeneID:828453Gramene:AT4G23530.1
hmmpanther:PTHR31509hmmpanther:PTHR31509:SF7HOGENOM:HOG000241140InterPro:IPR008511
KEGG:ath:AT4G23530ncoils:CoilOMA:PCQTSSVPfam:PF05633
PhylomeDB:O81749PIR:T05391Proteomes:UP000006548RefSeq:NP_194084.1
TAIR:AT4G23530UniGene:At.47961UniGene:At.48897UniProt:O81749
Coordinates (TAIR10) chr4:+:12279171..12280361
Molecular Weight (calculated) 44166.30 Da
IEP (calculated) 7.35
GRAVY (calculated) -0.22
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MARATEFQGS FLSRISIRRN QIVSMDVNHE QELEELEYFQ KHVAERFSDL ITSPSPPPSS SSSAVSQPSD PILSIPWLQN LLDVFMSCEA EFKAVLSTTQ
101: ISKSPSLERV LPEMLDRILK ALDLCNAVVN GIDSVRQSRR FAEIAVTALK QRPLCDGSVR RAKRALTSLL IGLNADERRD RNSGGSGCSN QRRTTSRSWS
201: FGTRSNVTGG GLYGQVVSKN WSASKQIQAM VANLVLPRGA EASGPAMPVY IMSSVMVLVM WVLVAAVPCQ TSSVLVAPLP LPKHQNWASA AMSIQERIGE
301: EIKRKEKRCG GGGLMEEMQR MEKIGLSLME FAERFRFPAD EEEEVEVAEK VDEMEEICRR MEVGLEDLQR QVRQVFHRLV RSRIEIVSLL EQAPAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)