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AT4G23420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.499
peroxisome 0.499
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G23430.2); Has 55665 Blast hits to 55601 proteins in 3020 species: Archae - 461; Bacteria - 37265; Metazoa - 4181; Fungi - 3321; Plants - 1828; Viruses - 0; Other Eukaryotes - 8609 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G23420-MONOMERBioCyc:ARA:GQT-1663-MONOMERBioCyc:ARA:GQT-1664-MONOMEReggNOG:COG1028
eggNOG:KOG1208EMBL:AK176286EMBL:AY142620EMBL:CP002687
EnsemblPlants:AT4G23420EnsemblPlants:AT4G23420.1EnsemblPlants:AT4G23420.2entrez:828441
ExpressionAtlas:Q8H1Q6Gene3D:3.40.50.720GeneID:828441GO:GO:0016491
Gramene:AT4G23420.1Gramene:AT4G23420.2hmmpanther:PTHR24320hmmpanther:PTHR24320:SF83
InterPro:IPR002347InterPro:IPR016040Pfam:PF00106PhylomeDB:Q8H1Q6
PRINTS:PR00081Proteomes:UP000006548Reactome:R-ATH-2453902Reactome:R-ATH-5365859
RefSeq:NP_194073.2RefSeq:NP_974596.1SMR:Q8H1Q6STRING:3702.AT4G23420.3
SUPFAM:SSF51735TAIR:AT4G23420UniGene:At.32429UniProt:Q8H1Q6
Coordinates (TAIR10) chr4:+:12226288..12228562
Molecular Weight (calculated) 34070.80 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.09
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGAGAKVK EDIVKQVPGA KVDVMELELS SMESVRKFAS
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)