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AT4G22930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pyrimidin 4
Curator
Summary (TAIR10)
Encodes dihydroorotase (PYR4).
Computational
Description (TAIR10)
pyrimidin 4 (PYR4); FUNCTIONS IN: dihydroorotase activity; INVOLVED IN: 'de novo' pyrimidine base biosynthetic process, pyrimidine base biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroorotase, conserved site (InterPro:IPR002195), Dihydroorotase homodimeric type (InterPro:IPR004721), Amidohydrolase 1 (InterPro:IPR006680); Has 3373 Blast hits to 3371 proteins in 1108 species: Archae - 32; Bacteria - 2225; Metazoa - 2; Fungi - 146; Plants - 54; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G22930-MONOMERBioGrid:13681BRENDA:3.5.2.3EC:3.5.2.3
eggNOG:COG0418eggNOG:KOG2902EMBL:AF000146EMBL:AK228295
EMBL:AL031018EMBL:AL161558EMBL:CP002687EnsemblPlants:AT4G22930
EnsemblPlants:AT4G22930.1entrez:828392GeneID:828392Genevisible:O04904
GO:GO:0004151GO:GO:0005739GO:GO:0009507GO:GO:0019856
GO:GO:0044205GO:GO:0046872Gramene:AT4G22930.1gramene_pathway:3.5.2.3
gramene_pathway:PWY-5686HAMAP:MF_00219hmmpanther:PTHR11647hmmpanther:PTHR11647:SF59
HOGENOM:HOG000256259InParanoid:O04904InterPro:IPR002195InterPro:IPR004721
InterPro:IPR006680InterPro:IPR032466KEGG:00240+3.5.2.3KEGG:ath:AT4G22930
KO:K01465OMA:YAEAFEQPANTHER:PTHR11647:SF59PaxDb:O04904
Pfam:O04904Pfam:PF01979PhylomeDB:O04904PIR:T05124
PIRSF:PIRSF001237PRIDE:O04904PRO:PR:O04904PROSITE:PS00482
PROSITE:PS00483ProteinModelPortal:O04904Proteomes:UP000006548RefSeq:NP_194024.1
scanprosite:PS00482scanprosite:PS00483SMR:O04904STRING:3702.AT4G22930.1
SUPFAM:SSF51556TAIR:AT4G22930tair10-symbols:DHOASEtair10-symbols:PYR4
TIGRfam:TIGR00856TIGRFAMs:TIGR00856UniGene:At.2374UniPathway:UPA00070
UniProt:O04904
Coordinates (TAIR10) chr4:+:12019315..12021200
Molecular Weight (calculated) 41952.00 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.12
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKTLVSPYS GFGSQKLKFD RSSEKVKTRA VRMELTITQP DDWHLHLRDG DLLHAVVPHS ASNFKRAIVM PNLKPPVTST AAAIIYRKFI MKALPSESSF
101: DPLMTLYLTD KTLPEEIRLA RESGVVYAVK LYPAGATTNS QDGVTDLFGK CLPVLEEMVK QNMPLLVHGE VTDPSIDVFD REKIFIETVL QPLIQRLPQL
201: KVVMEHITTM DAVNFVESCK EGSVGATVTP QHLLLNRNAL FQGGLQPHNY CLPVLKREIH REAIVKAVTS GSKKFFLGTD SAPHERSRKE SSCGCAGIYS
301: APIALSLYAK VFDEAGALDK LEAFTSFNGP DFYGLPRNSS KITLKKSPWK VPDVFNFPFG EIVPMFAGET LQWQPLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)