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AT4G21895.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif-containing protein (TAIR:AT5G52890.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:CP002687EnsemblPlants:AT4G21895
EnsemblPlants:AT4G21895.1entrez:6240424GeneID:6240424GO:GO:0003677
Gramene:AT4G21895.1hmmpanther:PTHR34682hmmpanther:PTHR34682:SF2InParanoid:B3H641
KEGG:ath:AT4G21895OMA:ETECARAPaxDb:B3H641PhylomeDB:B3H641
PRIDE:B3H641ProteinModelPortal:B3H641Proteomes:UP000006548RefSeq:NP_001119023.1
STRING:3702.AT4G21895.1TAIR:AT4G21895UniGene:At.2064UniProt:B3H641
Coordinates (TAIR10) chr4:-:11613523..11614242
Molecular Weight (calculated) 26101.80 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.66
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSPPPSSND GLAKRKRGRP RKDENSTPKP DMNLVGKVVT GVIEGSFDAG YLLNVKVKDS DTQLRGLVFI RGRVTPITPE NDVAPLVKMY GREDIKNNQT
101: DHSFPTDQPM QDAAVTTTDM DISESSRALV VVPQATNGQA KEATKDEDGV IEGQADTRLV EFFPTPGTMM MTAQPNLVLV PKETEQQKTT GGSHGFDLME
201: EEPVRQGEKL PEELLHLELG NKTTLSVDNN ISTTEAPDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)