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AT4G21800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.733
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370).
Computational
Description (TAIR10)
quatre-quart2 (QQT2); FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: embryo development, cell division; LOCATED IN: microtubule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G12790.5); Has 2058 Blast hits to 2011 proteins in 308 species: Archae - 125; Bacteria - 22; Metazoa - 628; Fungi - 487; Plants - 203; Viruses - 22; Other Eukaryotes - 571 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNRCeggNOG:KOG1532EMBL:AF419563EMBL:AY143879
EMBL:CP002687EnsemblPlants:AT4G21800EnsemblPlants:AT4G21800.1EnsemblPlants:AT4G21800.2
entrez:828268Gene3D:3.40.50.300GeneID:828268GO:GO:0003924
GO:GO:0005874GO:GO:0009793GO:GO:0051301Gramene:AT4G21800.1
Gramene:AT4G21800.2hmmpanther:PTHR21231hmmpanther:PTHR21231:SF8IntAct:Q8W586
InterPro:IPR004130InterPro:IPR027417InterPro:IPR030230KEGG:ath:AT4G21800
KO:K06883ncoils:CoilOMA:KPVCLIVPANTHER:PTHR21231
PANTHER:PTHR21231:SF8Pfam:PF03029PhylomeDB:Q8W586Proteomes:UP000006548
RefSeq:NP_193911.1RefSeq:NP_974586.1STRING:3702.AT4G21800.1SUPFAM:SSF52540
TAIR:AT4G21800tair10-symbols:QQT2UniGene:At.27392UniGene:At.48892
UniProt:Q8W586
Coordinates (TAIR10) chr4:+:11573289..11574976
Molecular Weight (calculated) 42553.00 Da
IEP (calculated) 4.26
GRAVY (calculated) -0.34
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPMESSSEQ DIVEESQKLV DSLDKLRVSA ASSSSNFKKK PIIIIVVGMA GSGKTSFLHR LVCHTFDSKS HGYVVNLDPA VMSLPFGANI DIRDTVKYKE
101: VMKQYNLGPN GGILTSLNLF ATKFDEVVSV IEKRADQLDY VLVDTPGQIE IFTWSASGAI ITEAFASTFP TVVTYVVDTP RSSSPITFMS NMLYACSILY
201: KTRLPLVLAF NKTDVADHKF ALEWMEDFEV FQAAIQSDNS YTATLANSLS LSLYEFYRNI RSVGVSAISG AGMDGFFKAI EASAEEYMET YKADLDMRKA
301: DKERLEEERK KHEMEKLRKD MESSQGGTVV LNTGLKDRDA TEKMMLEEDD EDFQVEDEED SDDAIDEDDE DDETKHYYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)