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AT4G38930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.804
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin fusion degradation UFD1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:830048eggNOG:COG5140eggNOG:KOG1816EMBL:AF419602
EMBL:AK221534EMBL:AY132013EMBL:CP002687EnsemblPlants:AT4G38930
EnsemblPlants:AT4G38930.1entrez:830048ExpressionAtlas:Q8W570GeneID:830048
GO:GO:0006511Gramene:AT4G38930.1hmmpanther:PTHR12555hmmpanther:PTHR12555:SF17
HOGENOM:HOG000212737IntAct:Q8W570InterPro:IPR004854KEGG:ath:AT4G38930
KO:K14016PANTHER:PTHR12555Pfam:PF03152PhylomeDB:Q8W570
Proteomes:UP000006548Reactome:R-ATH-110320RefSeq:NP_568048.1SMR:Q8W570
STRING:3702.AT4G38930.2TAIR:AT4G38930UniGene:At.2837UniGene:At.67000
UniProt:Q8W570
Coordinates (TAIR10) chr4:+:18149907..18151616
Molecular Weight (calculated) 34583.80 Da
IEP (calculated) 5.28
GRAVY (calculated) -0.54
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MFYDGYAYHG TTFEQTYRCY PSSFIDKPQI ESGDKIIMPP SALDRLASLQ IDYPMLFELR NASTDSFSHC GVLEFIAEEG VIYIPYWMMQ NLLLQEGDMV
101: RVRNVTLPKG TYVKLQPHTT DFLDIANPKA ILETALRNYS CLTVGDSIMV PYNNKKYFID IVEAKPSNGI SIIETDCEVD FAPPLDYKEP ERPVAPAPAK
201: AKEVDVAEAE PKFNPFTGSG RRLDGRPLSY EPQPGAANSN GQSHPVASSS SSGSEKATQQ NRGKLVFGSN VERSTKETTK VGAGKDRKQE EEAEKEAKFQ
301: AFSGKKYSLR G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)