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AT4G18910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NOD26-like intrinsic protein 1;2
Curator
Summary (TAIR10)
Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.When expressed in yeast cells can conduct hydrogen peroxide into those cells.
Computational
Description (TAIR10)
NOD26-like intrinsic protein 1;2 (NIP1;2); FUNCTIONS IN: water channel activity, arsenite transmembrane transporter activity; INVOLVED IN: transport, hydrogen peroxide transmembrane transport, response to arsenic, arsenite transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like major intrinsic protein 1 (TAIR:AT4G19030.1); Has 10753 Blast hits to 10647 proteins in 2223 species: Archae - 110; Bacteria - 5339; Metazoa - 1367; Fungi - 450; Plants - 2101; Viruses - 4; Other Eukaryotes - 1382 (source: NCBI BLink).
Protein Annotations
BioGrid:12919eggNOG:COG0580eggNOG:KOG0223EMBL:AJ250668
EMBL:AL021711EMBL:AL161549EMBL:AY072380EMBL:AY084720
EMBL:BT000096EMBL:CP002687EnsemblPlants:AT4G18910EnsemblPlants:AT4G18910.1
entrez:827626Gene3D:1.20.1080.10GeneID:827626Genevisible:Q8LFP7
GO:GO:0005886GO:GO:0006833GO:GO:0015105GO:GO:0015250
GO:GO:0015254GO:GO:0015700GO:GO:0015793GO:GO:0016021
GO:GO:0046685GO:GO:0080170Gramene:AT4G18910.1hmmpanther:PTHR19139
hmmpanther:PTHR19139:SF144HOGENOM:HOG000288286InParanoid:Q8LFP7InterPro:IPR000425
InterPro:IPR022357InterPro:IPR023271iPTMnet:Q8LFP7KEGG:ath:AT4G18910
KO:K09874MINT:MINT-8070165OMA:QQKEAIHPANTHER:PTHR19139
PaxDb:Q8LFP7Pfam:PF00230Pfam:Q8LFP7PhylomeDB:Q8LFP7
PIR:T05028PRIDE:Q8LFP7PRINTS:PR00783PRO:PR:Q8LFP7
PROSITE:PS00221ProteinModelPortal:Q8LFP7Proteomes:UP000006548RefSeq:NP_193626.1
scanprosite:PS00221SMR:Q8LFP7STRING:3702.AT4G18910.1SUPFAM:SSF81338
TAIR:AT4G18910tair10-symbols:ATNLM2tair10-symbols:NIP1;2tair10-symbols:NLM2
TCDB:1.A.8.12.7TIGRfam:TIGR00861TIGRFAMs:TIGR00861TMHMM:TMhelix
UniGene:At.1953UniProt:Q8LFP7
Coordinates (TAIR10) chr4:+:10366211..10368179
Molecular Weight (calculated) 31271.20 Da
IEP (calculated) 8.59
GRAVY (calculated) 0.45
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)