suba logo
AT4G18830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ovate family protein 5
Curator
Summary (TAIR10)
Member of the ovate protein family.Interacts with BLH1 and KNAT3. Regulates the subcellular localization of BLH1.
Computational
Description (TAIR10)
ovate family protein 5 (OFP5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 4 (TAIR:AT1G06920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12910eggNOG:ENOG410J060eggNOG:ENOG410YW2JEMBL:AL021711
EMBL:AL161549EMBL:AY063996EMBL:AY096608EMBL:CP002687
EnsemblPlants:AT4G18830EnsemblPlants:AT4G18830.1entrez:827617GeneID:827617
GO:GO:0005730GO:GO:0006351GO:GO:0009553GO:GO:0030863
GO:GO:0045892Gramene:AT4G18830.1hmmpanther:PTHR33057hmmpanther:PTHR33057:SF10
HOGENOM:HOG000150656InParanoid:Q8VZN1IntAct:Q8VZN1InterPro:IPR006458
iPTMnet:Q8VZN1KEGG:ath:AT4G18830ncoils:CoilOMA:IMENGIN
PaxDb:Q8VZN1Pfam:PF04844Pfam:Q8VZN1Pfscan:PS51754
PhylomeDB:Q8VZN1PIR:D85212PRO:PR:Q8VZN1PROSITE:PS51754
ProteinModelPortal:Q8VZN1Proteomes:UP000006548RefSeq:NP_193618.2STRING:3702.AT4G18830.1
TAIR:AT4G18830tair10-symbols:ATOFP5tair10-symbols:OFP5TIGRfam:TIGR01568
TIGRFAMs:TIGR01568UniGene:At.27110UniProt:Q8VZN1
Coordinates (TAIR10) chr4:+:10337449..10338498
Molecular Weight (calculated) 40373.10 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.99
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MMRWGRKKPV SSSSSSGLSR ALPVSWFSKL SGSSDLKPAK EKKQDEKASQ NISVKTSLSS TTRRSDIHEN SKRFQRVSVE KENSATRSAD KESNEKFEEI
101: MSSVRKKVRD FQKETCGFLE VEAMDRDNGT VILTPRIQVN RDKQRCERRD QRLLEQKPKR SEQDAGVKVK KPARRTGTGG YSREDSVILG HTITKPAHQW
201: EKLKEVKLRE VKLKADQQRK SLYLKRELNR IGTKENNKVR VFSPRASEKC RVKAIEDLKK AKQRAREHEL LIETADGGME NESFAVVKCS SDPQKDFRDS
301: MIEMIMENGI NHPEELKELL VCYLRLNTDE YHDMIISVFQ QVHNDFNFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)