AT4G18230.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.859 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:10080521..10081710 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 26310.00 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.19 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.42 | ||||||||||||||||||||||||||||||||||||
Length | 233 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEEGCNCVYS RMASKFSIGL LIILAIVLLM VRVLYVIYRC GKPLPKGASQ SFTTLIVLGS GGHTAEMLSL LSVLRKDRFT PRFYIAAATD NMSLQKARSF 101: EDSLAEKPAV KEASSQFMQI YRSREVGQSY VTSVWTTIVA ILHALWLMIR IRPQVILCNG PGTCIPLCVI AFLFKVLGIR WSSIFYVESV ARVKKLSLSG 201: LLLYKLRIAD QFFVQWPQLH KKYPRAHYVG CLM |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)