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AT4G17480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G17470.3); Has 618 Blast hits to 614 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 94; Plants - 140; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17480-MONOMEReggNOG:COG1075eggNOG:KOG2541EMBL:BT004181
EMBL:BT005469EMBL:CP002687EnsemblPlants:AT4G17480EnsemblPlants:AT4G17480.1
entrez:827459ESTHER:arath-AT4G17480Gene3D:3.40.50.1820GeneID:827459
GO:GO:0002084GO:GO:0008474Gramene:AT4G17480.1gramene_pathway:3.1.2.2
gramene_pathway:PWY-5148hmmpanther:PTHR11247hmmpanther:PTHR11247:SF8HOGENOM:HOG000199232
InterPro:IPR002472InterPro:IPR029058InterPro:IPR030294KEGG:ath:AT4G17480
KO:K01074OMA:GIRDQCSPANTHER:PTHR11247:SF8Pfam:PF02089
PhylomeDB:Q84JI7PRINTS:PR00414Proteomes:UP000006548Reactome:R-ATH-75876
RefSeq:NP_193478.1SMR:Q84JI7STRING:3702.AT4G17480.1SUPFAM:SSF53474
TAIR:AT4G17480TMHMM:TMhelixUniGene:At.43406UniProt:Q84JI7
Coordinates (TAIR10) chr4:-:9745313..9746847
Molecular Weight (calculated) 33715.40 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.10
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSFQKSAL LVTLTLFFFI PVSISVPFIL FHGIRDQCSN GGVSSFVQLL SNLSSSHGSC LEIGNGEQDS VTMPLTQQAS VACEKVKQMK DLSQGYNIVA
101: QSQGNLVARG LIEFCDNAPP VFNYISLGGP HAGISDIPKC NSTLCELLKT AVYTDFVQDH IAPSGYIKIP TDIKDYLEHS KYLPKINNER PNERNTTFKD
201: RFTSLHNLVL VMFEGDAVVI PKESSWFGYY PDGASTPLLS PQQTKLYTED WIGLKTLDAA RKVKFVSVPG EHLRIAQDDV VKHVVPYLKN QPASMSEDLE
301: ILHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)